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EMAGE:14085

4930471M23Rik RIKEN cDNA 4930471M23 gene ( MGI:1922169)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14085 EMAGE:14085 EMAGE:14085 EMAGE:14085 EMAGE:14085
"Pseudo-wholemount" of euxassay_001724. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001724_01 euxassay_001724_02 euxassay_001724_03 euxassay_001724_04

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14085Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14085_wholemount_moderate.wlz
14085_wholemount_weak.wlz
14085_wholemount_possible.wlz
14085_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14085_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4101
Entity Detected:4930471M23Rik, RIKEN cDNA 4930471M23 gene ( MGI:1922169)
Sequence:sense strand is shown

>T4101
GGAGACTCCACATCCCGGGTGACCCGGGTTGGAGCTGCTGATTCAAGTGGTCTCTCGTGTCCACCACTAT
GGCCTGGACTAAGTACCAGTTGTTCCTGGCCGGGCTTATGCTGGTCACCGGCTCCATCAACACGCTTTCG
GCAAAGTGGGCCGACAACTTTGTAGCTGAGGGCTGTGGAGGAAGCCAGGAGCACAGCTTCAAGCATCCCT
TCGTCCAGGCAGTGGGCATGTTCCTGGGAGAGTTCTCCTGCCTTGCTGCCTTCTACCTGCTCAAATGCCA
AGGCAGAAGACAGTCAGCCTCCAGTGTAGAGCCCCAGCAGCCCTTCAACACCCTGCTTTTCCTGCCCCCA
GCCCTGTGTGACATGACTGGGACCAGCATCATGTACGTGGCCCTGAACATGACCAGTGCCTCAAGCTTTC
AGATGCTGCGGGGTGCAGTGATCATCTTCACAGGCCTGTTCTCAGTGGCCTTCCTGGACCGGAGGCTGGC
ACCAAGCCAGTGGCTGGGCATCCTGATCACTATTGCGGGACTGGTGGTAGTTGGCCTAGCTGACCTCCTG
AGCAAGCATGACAGTCAACACAAGCTCAGTGAAGTCATCACAGGTGACTTGTTGATCATCATGGCCCAGA
TCATCATTGCCATCCAGATGGTGCTAGAGGAGAAGTTTGTCTACAAACACAACATCCACCCACTCCAGGC
AGTAGGCATCGAGGGCTTCTTCGGCTTCGTGATCCTCTCGCTGCTCCTTGTGCCTATGTTCTACATCCCC
ACGGCCTCCTTTAGTGGGAACCCTCGCGGGGTGCTGGAAGACGCGCTGGATGCCTTCTGCCAAGTGGGCC
GACAGCCCCTGATTGCCCTGGCTCTGCTAGGCAACATCAGCAGCATTGCCTTCTTCAACTTTTCGGGCAT
CAGCGTCACCAAGGAACTGAGTGCCACCACCCGCATGGTGCTAGACACCCTGCGCACCATAGTCATCTGG
GCCTTTACCCTCGCACTGGGCTGGGAGATCTTCTATCCATTGCAGATCCTTGGTTTCCTCATCCTCCTTA
TGGGCACCGCCCTCTACAATGGGCTGCACCGACCACTGCTAGCCTTCCTGTCCAGACGCTGGCGACTCCC
TACCCAGGAGGGAGAGCAAGAGAGACTGCTAGGTGACAGTCGGACTCCCATCAATGAAGCCAGCTGAGCC
CGCAGTGAGATCTCTGCTGCCACCAGATGGCTGAGGCCATGCAGACTGGTGGGCTGTGGGTGCCCTGTCC
CCAAGGCCTCACCCCACCCATCCCTAATGACCCCTCTGTGCGGCCGTTGCCAGAGAGGATGGGAGGATAC
CAGGTCTTGCTTTAATCCTGAGGCCTGTAATATTGGGACCCAGCCCCCACAGGCCCAGAGATGGCAACCA
CTCTCAGCCTCCAGTTCTGCTGCACTAGAACAAAATTACGAGCTTGAATGGCAAGAAAAAAAAAAAAAAA
A
Notes:The probe template was PCR amplified from IMAGE:4458315 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4458315 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14089 same embryo
 EMAGE:14088 same embryo
 EMAGE:14086 same embryo
 EMAGE:14087 same embryo
 EurExpress:euxassay_001724 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS