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EMAGE:14137

Tmem41a transmembrane protein 41a ( MGI:1913914)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137
"Pseudo-wholemount" of euxassay_001830. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001830_01 euxassay_001830_02 euxassay_001830_03 euxassay_001830_04
EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137
euxassay_001830_05 euxassay_001830_06 euxassay_001830_07 euxassay_001830_08 euxassay_001830_09
EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137
euxassay_001830_10 euxassay_001830_11 euxassay_001830_12 euxassay_001830_13 euxassay_001830_14
EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137 EMAGE:14137
euxassay_001830_15 euxassay_001830_16 euxassay_001830_17 euxassay_001830_18 euxassay_001830_19
EMAGE:14137 EMAGE:14137 EMAGE:14137
euxassay_001830_20 euxassay_001830_21 euxassay_001830_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14137Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14137_wholemount_strong.wlz
14137_wholemount_moderate.wlz
14137_wholemount_weak.wlz
14137_wholemount_possible.wlz
14137_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14137_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4932
Entity Detected:Tmem41a, transmembrane protein 41a ( MGI:1913914)
Sequence:sense strand is shown

>T4932
CCCACGCGTCCGGGCCGCGGCATGCGCGCGCTGCTCGGCTTGCTCCTCGTATTCGGAGGCTGCACCTTCG
CATTATACCTGCTCTCCACGCGGCTGCCCTTGGGGCCGAGGCTGGCGGCGGCCGGGGAGCCCGAAGGCCG
GTCGCTGTGGTTCCCCTCCGATCTGGCAGAGCTGCGGGAGCTCTCTGAAGTTCTTCGAGAGTACCGGAAA
GAGCACCAGGCCTATGTGTTCCTGCTCTTTTGCAGTGCCTACCTCTACAAGCAGGGCTTTGCCATCCCTG
GCTCCAGCTTCCTGAATGTTTTGGCTGGTGCCTTGTTCGGGCCATGGCTGGGACTTTTGCTGTGCTGCGT
GTTGACATCCGTGGGTGCCACAGGCTGCTACCTGCTTTCCAGTCTTTTCGGCAAACAGCTGGTCATCTCC
TACTTTCCTGATAAAGTGGCCCTGCTGCAGAAGAAGGTGGAGGAGAACCGAAACAGCCTGTTCTTTTTCC
TGCTGTTCCTCAGACTCTTCCCCATGACACCAAACTGGTTCTTGAACCTCTCGGCCCCGATTCTGAACAT
CCCCATTGTGCAGTTTTTCTTCTCAGTGCTCATCGGTTTGATCCCTTACAATTTCATCTGCGTGCAGACG
GGCTCCATCCTCTCCACCCTCACCTCTCTGGATGCCCTCTTCTCTTGGGAGACTGTCTTGAAGCTCTTGG
CCATCGCCCTGGTCGCTTTGGTTCCGGGAACGCTCATCAAAAAATTTAGCCAGAAGCGCCTGGCGCTGAG
TGAAACAAGCGACATCGGCCACCCAGACCGCAGGAAGGACGCATGATGTGGGTTCTGTGTTTACAGGGCC
CGGACTGTGCTGCTGGTCCCTTTAATGTCCTCATTGTGTTTTAATTACCCTCAAAGGATGAGATGGACAG
TGCTCTAGTGTGTGCAGAGGTCTGTTAGAAGGGCGTTTTGTCCTGTTCAGCAGGTTCTATGAAATGGACC
ACTTTCTAGAAATCCTATCCAGTTATCTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGA
TGATGCTGGTGGCCTTTTTGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTCTCTACCT
TTCTGCTGCTGATCTACCTCTCCATAAGCCAAGGGAAACATGACGGGCTGCGTAGGTCTTACACGCAGCA
TTTAAGTGCAGGGATTCCTGCATTTCCCCTGTTCACAGATACTTCTATCCATGTTGAAGCTCCTTGTAGT
TATATGTCTTGATAGTTAGGCTGATTCAAACATGATTAAAGATGAACGGAAGCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5124769 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5124769 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14138 same embryo
 EMAGE:14140 same embryo
 EMAGE:14141 same embryo
 EMAGE:14139 same embryo
 EurExpress:euxassay_001830 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS