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EMAGE:14226

Brix1 BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) ( MGI:1915082)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226
"Pseudo-wholemount" of euxassay_001815. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001815_01 euxassay_001815_02 euxassay_001815_03 euxassay_001815_04
EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226
euxassay_001815_05 euxassay_001815_06 euxassay_001815_07 euxassay_001815_08 euxassay_001815_09
EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226
euxassay_001815_10 euxassay_001815_11 euxassay_001815_12 euxassay_001815_13 euxassay_001815_14
EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226 EMAGE:14226
euxassay_001815_15 euxassay_001815_16 euxassay_001815_17 euxassay_001815_18 euxassay_001815_19
EMAGE:14226 EMAGE:14226
euxassay_001815_20 euxassay_001815_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14226Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14226_wholemount_strong.wlz
14226_wholemount_moderate.wlz
14226_wholemount_weak.wlz
14226_wholemount_possible.wlz
14226_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14226_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4165
Entity Detected:Brix1, BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) ( MGI:1915082)
Sequence:sense strand is shown

>T4165
CGCGGCGAGGCGAGATGGCGGCGACCAAGAGAAAGCGGCGTGGGGGCTTGGAGGTTCAAGCGAAGAAGCC
AAAAAGGAGCTCGAAAGATGCCGGGCAGCCAGCTAAGCAGGCCGATGTGGCCAAAGAGGCGGAGGAGGAA
AATAGAGATCGTATTCCAGGTCCGGTTTGCAAGGGCAAATGGAAAAATAAGGAGCGGATCCTCATCTTTT
CTTCCAGAGGAATAAATTTCAGAACAAGACACTTAATGCAAGACTTGAGAATGTTGATGCCTCATTCTAA
AGCAGATACTAAAATGGATCGTAAAGATAAATTATTTGTGATAAATGAGGTCTGTGAAATGAAAAATTGT
AACAAATGCATCTACTTTGAAGCTAAGAAAAAACAGGATCTCTATATGTGGCTTTCAAATTCACCTCATG
GTCCATCTGCCAAATTCTTGGTTCAAAATATTCATACCCTGGCTGAATTAAAGATGACTGGAAACTGTTT
GAAAGGTTCTCGGCCCCTTTTGTCTTTTGACCCTGCTTTTGATGACTTGCCACATTATGCTTTGCTAAAG
GAATTCTTAATTCAGATCTTCAGTACGCCACGATACCATCCCAAGAGTCAGCCGTTTGTGGACCACGTGT
TTACGTTCACCATTCTGGATAACAGGATATGGTTCCGGAACTTCCAGATTATAGAAGAAGACGCTGCTCT
AGTGGAAATAGGACCTCGTTTTGTTTTAAATCTCATAAAGATTTTTCAGGGAAGCTTTGGAGGACCAACC
TTATATGAAAATCCTCATTACCAGTCTCCAAACATGCATCGGCGTGTCATAAGATCCATCACAGCTGCCA
AGTATAGAGAGAGACAGCAAGTCAAAGATGTTCAGAAACTGAGGAAGAAAGAACCAAAGACTATCCTTCC
ACATGACCCCACTGCAGACGTGTTTGTTATACCAGCGGAGGAGAAGCCAGTAGAAATACAGTGGGTGAAA
CCAGAACCTAAAGTAGATCTGAAAGCAAGGAAGAGACGGATTTACAAAAGGCATCGGAAACTGCAACAGA
AGATGAGCAGAGGGAGTGCAAAGTGAATCAGAGGATAACTGTATTTATTTTGTATTCCATGTGTAAATAC
TTTTAGTATACAGAATGAGCTATGCCTAATTAGGGCACCATTTTAAAAAATTGAAATCTTTAAGTCGGTG
TTGGTCTTTTTCTAATAAAGCATCTTAACTCAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4484024 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4484024 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14227 same embryo
 EMAGE:14225 same embryo
 EMAGE:14224 same embryo
 EurExpress:euxassay_001815 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS