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EMAGE:14248

Pak4 p21 protein (Cdc42/Rac)-activated kinase 4 ( MGI:1917834)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14248 EMAGE:14248
euxassay_004090_01 euxassay_004090_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14248Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14248_wholemount_strong.wlz
14248_wholemount_moderate.wlz
14248_wholemount_weak.wlz
14248_wholemount_possible.wlz
14248_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14248_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5559
Entity Detected:Pak4, p21 protein (Cdc42/Rac)-activated kinase 4 ( MGI:1917834)
Sequence:sense strand is shown

>T5559
ATGGCGGCGGCAGTAGCCGCGGCGGCGGCGGCGCGAGACCGCTGAGGGCGGTACGCGGGCACAGAGTTCT
GGGCCAGGCAGCTAGGCCGCGAGCGACCGCGGCGCCAAGCCGATGAGTAACTCAAAGCCTCAGGAGGAGA
CGTCACCCACGCAAAGGTGCTTCTAGCCCAGCCAGCTTCAGACCAGGTGCCTGTAAGAACTCAAGCCACC
CCACTGTTCACAAACTCTGTGCTAAGGCCCTGGAACCATGTTTGGAAAGAAGAAGAAGCGGGTGGAGATC
TCAGCCCCATCCAACTTCGAGCACCGTGTACACACAGGCTTTGATCAGCATGAGCAGAAGTTCACAGGGC
TGCCCCGCCAGTGGCAGAGCCTGATTGAGGAATCAGCACGCAGACCCAAGCCCCTGATCGACCCTGCCTG
CATCACGTCCATCCAGCCTGGAGCCCCCAAGACCATCGTTCGGGGCAGCAAAGGTGCCAAGGATGGGGCT
CTCACTCTGCTGCTTGACGAATTTGAGAACATGTCGGTGACGCGCTCCAACTCCCTACGCAGAGAGAGTC
CACCACCACCTGCCCGTGCCCACCAGGAGAATGGAATGCTGGAGGAGCGGGCAGCCCCGGCCAGAATGGC
CCCTGACAAAGCTGGAAGCAGAGCCCGGGCCACAGGCCACAGTGAGGCAGGCAGTGGCAGTGGTGACAGA
CGGCGGGTGGGGCCAGAGAAAAGGCCCAAATCTTCGAGGGATGGTCCAGGAGGACCCCAGGAGGCCTCCC
GCGATAAGCGCCCACTCTCTGGGCCTGATGTCAGCACTCCTCAGCCTGGCAGTCTGACCAGCGGGACAAA
ACTAGCAGCTGGCAGGCCCTTTAACACATACCCACGGGCTGACACGGACCACCCACCCCGCGGTGCCCAG
GGGGAGCCACATACCATGGCCCCTAATGGGCCTTCAGCCACAGGCCTGGCCGCTCCTCAGTCTTCCTCCT
CCTCCCGGCCTCCCACCCGAGCCCGTGGTGCTCCCAGCCCAGGAGTTCTGGGTCCCCATGCCTCTGAGCC
CCAGTTGGCCCCCCCAGCACGTGCCCTTGCTGCCCCTGCTGTACCTCCTGCCCCTGGGCCCCCTGGGCCT
CGCTCACCACAGCGGGAGCCCCAACGAGTGTCCCATGAGCAGTTCCGGGCTGCCCTGCAGCTGGTGGTGG
ACCCAGGGGACCCTCGTTCCTATCTAGACAACTTCATCAAGATTGGTGAGGGCTCTACAGGTATTGTGTG
CATTGCCACTGTACGCAGCTCAGGCAAACTGGTGGCCGTCAAGAAGATGGACTTGCGCAAGCAGCAAAGA
CGTGAACTGCTCTTCAATGAGGTGGTGATCATGCGGGACTACCGGCACGAGAACGTGGTGGAGATGTACA
ACAGCTACCTGGTGGGTGACGAACTCTGGGTCGTCATGGAGTTCCTGGAAGGCGGCGCCCTCACGGATAT
TGTCACCCACACCAGGATGAACGAGGAACAGATCGCCGCCGTGTGCCTGGCTGTGCTTCAGGCGCTGGCT
GTGCTCCACGCCCAGGGTGTCATCCACCGTGACATCAAGAGTGACTCTATCTTGCTGACCCATGATGGCC
GGGTGAAGCTGTCCGACTTCGGGTTTTGTGCCCAGGTGAGCAAGGAGGTGCCTCGGAGGAAGTCGCTGGT
GGGCACCCCGTATTGGATGGCCCCGGAGCTCATCTCCCGCCTTCCCTATGGGCCAGAGGTGGATATCTGG
TCACTGGGGGTGATGGTGATCGAGATGGTGGATGGGGAGCCCCCTTACTTCAACGAGCCACCCCTCAAAG
CTATGAAGATGATCCGGGACAACCTCCCGCCCCGATTGAAGAACCTGCACAAGGCGTCACCGTCTCTGAA
AGGCTTCTTGGATCGCCTGCTAGTGCGGGACCCGGCCCAGCGGGCCACTGCTGCCGAGCTGCTGAAGCAC
CCGTTCCTCACCAAGGCGGGGCCACCAGCCAGCATCGTGCCCCTGATGCGCCAGCACCGAACCAGATGAG
CCCGAGCCTAGTCTTGAACCAAAGAGCCTGGCTACCCTTGCCAGGCAGAGGCCAGTAGAGGGCCAACCGG
CTCCCACAGCCCAGGAGACATTCTAGGGCACCGCCGTCACTGTGCTGGGGCCTTCGTGGGACCTACTACT
GAACTCTGGTTTTGATTCCATGACTTGTAAAGCCACACCAGGACATGTGGAGCACATGAGGCTCCCAGGA
ACCCAGGCCCCTCCCCTGGGCGCTGTCTGCAGGAGAGAGGCGGCTGCCCATCACTGGAAATCTGCATCAG
GGGCCACTGGGACAGAGACGACACTATGAGAAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGTGTGTGTGAGAGAGAGAGAGTGTGTGTGAGAGAGAGAGAGCACTCGTGCACCAAGAAAGT
CCAGCTCCTCTGTCCTCAGCCTATCTGGTGCCCAGCCCCTGACCCTGAGCCATTGAAGGGTCAATCATGA
ATGTTTGAAGAGTGGCCTTTTCCCAGAGCCCCACACCCTCTTTCCACAGGAGAAACATGGGGCCTCCCCT
TCCCCAACCTCTGCAGCAAATGACTACTGCACCCAGACAGCCTCCGTTTTCTAGAAGTCTATTTATATTG
TCATTTTATAACACTAGCTGTGTCTCTGTCTCAGCCTAGGAACAGATGGTCCCTGACCTATGGGGTGGCT
GGCCCAGGGACAGGGCCACTTTGAAGAATCAGGCTCCTGTCCCCCACCCTGCCGCCAGTCCCTCAAGTTA
GTTTTACAATTAAAGTATTTTCTTGTTTTTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6475114 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6475114 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14250 same embryo
 EMAGE:14249 same embryo
 EMAGE:14253 same embryo
 EMAGE:14252 same embryo
 EMAGE:14251 same embryo
 EurExpress:euxassay_004090 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS