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EMAGE:14250

Mmadhc methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria ( MGI:1923786)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250
"Pseudo-wholemount" of euxassay_004061. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004061_01 euxassay_004061_02 euxassay_004061_03 euxassay_004061_04
EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250
euxassay_004061_05 euxassay_004061_06 euxassay_004061_07 euxassay_004061_08 euxassay_004061_09
EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250
euxassay_004061_10 euxassay_004061_11 euxassay_004061_12 euxassay_004061_13 euxassay_004061_14
EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250 EMAGE:14250
euxassay_004061_15 euxassay_004061_16 euxassay_004061_17 euxassay_004061_18 euxassay_004061_19
EMAGE:14250
euxassay_004061_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14250Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14250_wholemount_strong.wlz
14250_wholemount_moderate.wlz
14250_wholemount_weak.wlz
14250_wholemount_possible.wlz
14250_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14250_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6109
Entity Detected:Mmadhc, methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria ( MGI:1923786)
Sequence:sense strand is shown

>T6109
GTGAGGGCCCGGGCGCGGAGGCCGCGCGGTGACTGGGATACTTTGCAGTGGGGCAAGAATTTGCGTCCGC
CTTCTTCACTAGAAATGGCCCATGTGCTCTGTAACAGAGCCAGACTGGTTTCCTATCTCCCAGGATTTTG
TTCTTTAGTGAAAAGAGTCATCAATCCAAGAGCCTTTTCAACTGCAGGATCTTCAGGTTCTGATGAGTCT
CATGTGGCCACCGCACCTCCAGATATATGCTCTCGAACAGTGTGGCCTGATGAAACTATGGGACCCTTTG
GACCTCAGGACCAGAGATTCCAGCTTCCTGGGAATATAGGCTTCGATTGTCACCTCAATGGGACTGCCTC
ACAGAAGAAAAGCCAGGCCCATAAAACTTTGCCTGATGTTCTAGCAGAGCCTCTTTCAACTGAAAGACAC
GAGTTTGTGATGGCGCAGTATGTAAATGAGTTTCAGGATAGTGATGCACCTGTTGAACAAGAAATTAACA
GTGCAGAAACTTACTTTGAAAGTGCCAAAGTTGAGTGTGCGATCCAGACATGTCCAGAGCTGCTGCGGAG
AGATTTTGAGTCACTTTTTCCAGAAGTGGCTAATAGCAAACTAATGATCCTGACTGTAACCCAGAAAACT
GAAAATGACATGACTGTCTGGAGTGAAGAGGTGGAGGTTGAGAGAGAGGTGCTCTTGGAAAAGTTCATCA
GTGGTGCTAAGGAGATCTGCTATGCCCTTCGGGCTGAAGGATATTGGGCTGACTTCATTGACCCATCATC
TGGTGTGGCATTTTTTGGACCATATACCAACAACACACTTTTTGAAACAGATGAACGGTACCGGCATTTA
GGATTCTCAGTTGACGACCTTGGCTGCTGTAAAGTGATCCGTCACAGTCTCTGGGGTACTCATGTGGTTG
TAGGAAGTATCTTCACTAACGCAACAGCAGACAGCAGTATCATGAGGAAGCTCAGTGGAAACTAGCAAGT
GGCACTGTGATAACTGCAGCGCTGTTTGTCTGTCATGGATTGCTCTATATAAACACTGTCATGGACAGCA
GCTTCTAGAGGATTCTTGTTTCTAGGTATTTATTGTATCATTTATGGGTTTACATGGACAGGTGACTTGG
GGTTTCAGAATTGCAAATGCTAGTTCCTATTCTGGAGTGCGTGCTGAACACATCCATATTCTGCAAAGTG
AGGTCATCAGCTTGTAACCAGGGTATGTGTGTTCTCTTAGGGTTGATTCTCCCCTTTATTGGGAAAACTT
TAATTATTTTTTCCAAAAATAAATCATACATTTGTCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
Notes:The probe template was PCR amplified from IMAGE:3493526 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3493526 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14249 same embryo
 EMAGE:14253 same embryo
 EMAGE:14252 same embryo
 EMAGE:14248 same embryo
 EMAGE:14251 same embryo
 EurExpress:euxassay_004061 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS