Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:14251

Tmx3 thioredoxin-related transmembrane protein 3 ( MGI:2442418)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251
"Pseudo-wholemount" of euxassay_004161. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004161_01 euxassay_004161_02 euxassay_004161_03 euxassay_004161_04
EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251
euxassay_004161_05 euxassay_004161_06 euxassay_004161_07 euxassay_004161_08 euxassay_004161_09
EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251
euxassay_004161_10 euxassay_004161_11 euxassay_004161_12 euxassay_004161_13 euxassay_004161_14
EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251 EMAGE:14251
euxassay_004161_15 euxassay_004161_16 euxassay_004161_17 euxassay_004161_18 euxassay_004161_19
EMAGE:14251 EMAGE:14251
euxassay_004161_20 euxassay_004161_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14251Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14251_wholemount_strong.wlz
14251_wholemount_moderate.wlz
14251_wholemount_weak.wlz
14251_wholemount_possible.wlz
14251_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14251_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4986
Entity Detected:Tmx3, thioredoxin-related transmembrane protein 3 ( MGI:2442418)
Sequence:sense strand is shown

>T4986
CTAAAGATGATATAATTGAGTTTGCTCACAGAGTGTCTGGGGCTCTAATTCGGCCTCTTCCAAGTCAACA
AATGTTCGACCATGTACGGAAGAGGCACCGTGTATTTTTTGTTTATATTGGTGGAGAATCACCCTTGAAA
GAGAAATACATAGATGCTGCTTCAGTTAATTGTATATACATACTTTTTTTCTGCCTCAGAAGATGTGGTT
CCTGAGTACGTGACGCTGAAAGAGATGCCTGCTGTGCTTGTTTTCAAAGATGACACTTATTTTGTTTATG
ATGAGTATGAAGATGGCGATCTGTCCTCATGGATCAGCAGAGAGAGGTTTCAGAACTACCTTACTATGGA
TGGTTTTCTCCTGTATGAACTTGGAGACACAGGAAAGCTTGTGGCCATAGCAGTTATTGATGAGAAAAAC
ACATCACTTGAGCATACCAGATTAAAGTCAATTATTCAGGAAGTTGCTAGAGATTTCAGAGACCACTTCC
ATAGAGATTTTCAGTTTGGCCATATGGATGGAAATGACTATATAAACACTTTGTTGATGGACGAATTAAC
AGTCCCAACAATAGTTGTACTGAATACTTCAAACCAACAGTACTTTTTGCTAGATAGACATATTAAGGAT
GCGAGCGACATGGTCCAGTTCATTAATAGCATTTTGGATGGTACAGTACCAGCCCAAGGAGGTGATAGCA
TTTTTCAGAGATTGAAAAGAATAGTATTTGATGCCAAATCTACAATTGTGTCTATATTCAAGAGCTCTCC
ACTTATGGGCTGCTTTCTTTTCGGGCTGCCACTGGGTGTCATCAGTATCATGTGCTATGGAATCTATACA
GCTGACACAGATGGAGGCTATATAGAAGAACGATATGAAGTATCTAAAAGTGAAATGGAAAACCAGGAAC
AGATAGAAGAGAGCAAAGAGCAAGAGTCCAGCAGTGGAGGGTCTCTAGCACCTACTGTGCAAGAGCCCAA
AGATGTATTAGAAAAGAAGAAAGATTGAGACTTCACAGATAAAAAATATTTGATAGAATGTCAAGTTATT
AAAGAGTATTTATTGAATTTAGAGATTTAATCATGATCTATTTACAGAAGAGAACATATTCTTTGTATTT
TGCTAATAACAACTGCATGAATTAAAATAATTCTTCCATAAGTAGGAAGATGTTTGGAACAAAGTGATGA
ACAGTTTGTCCAAAACAAAGCCAGATCATTGTATCAATTACTTTACAGATGCCCATTATATACACACTTC
TCTGTGTGCATGTTCTATGACAAAGTTAAGAAGCTTGGACAGAATATTAAATTGACCATTAATGTGGAAG
ATGGGTTTTTTGCAAAGAGAAATAGTACTTTCACCTACTATATCAATTCTCCTATATTTTGGATAAAATT
TATATAAACAAATAAAGTCTTTAAAATTTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5148985 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5148985 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14250 same embryo
 EMAGE:14249 same embryo
 EMAGE:14253 same embryo
 EMAGE:14252 same embryo
 EMAGE:14248 same embryo
 EurExpress:euxassay_004161 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS