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EMAGE:14286

Cpsf2 cleavage and polyadenylation specific factor 2 ( MGI:1861601)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14286 EMAGE:14286
euxassay_004101_01 euxassay_004101_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14286Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14286_wholemount_weak.wlz
14286_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14286_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6177
Entity Detected:Cpsf2, cleavage and polyadenylation specific factor 2 ( MGI:1861601)
Sequence:sense strand is shown

>T6177
GCGGCCACCACACAGGGGCTCCTGCCGGCTGCTCTCCGCCGCTGAGCGCGCGCTAGCTCTGCTCGCTCTC
CGACCTGCGTTCCACTAGGGGTTGGGAAGGGCGGCGGACGGTGCCGGGGGGAGATTGGCCTGGCAGGCCC
TTTTAGCTACCCATTACTGGACCAGAAAGATGACATCTATCATCAAGTTAACCACCCTCTCTGGGGTTCA
AGAAGAGTCCGCTCTTTGCTATCTTCTCCAGGTTGATGAGTTTAGGTTTTTGTTGGACTGTGGCTGGGAT
GAACACTTCTCTGTGGACATTATTGATTCCCTGAGGAAGCATGTTCACCAGATCGATGCAGTGCTCCTGT
CTCATCCTGATCCACTCCACCTCGGTGCCCTCCCATTCGCCGTGGGGAAGCTGGGTCTAAACTGTGCCAT
CTATGCAACAATTCCTGTGTATAAAATGGGCCAGATGTTCATGTACGACCTCTATCAGTCTCGACACAAT
ACAGAAGATTTTACCCTCTTTACATTGGATGATGTGGATGCAGCCTTTGACAAAATACAGCAGCTGAAGT
TCTCTCAGATTGTGAACCTGAAAGGCAAAGGACATGGTTTGTCTATCACACCCCTGCCAGCTGGTCATAT
GATAGGAGGGACAATATGGAAAATAGTCAAAGATGGAGAAGAAGAAATTGTGTATGCCGTGGACTTCAAC
CACAAGAGGGAGATCCACTTAAATGGATGTTCCCTGGAAATGCTAAGCAGACCCTCTCTACTTATCACAG
ACTCATTTAATGCTACTTACGTGCAGCCTAGAAGGAAGCAGAGAGATGAGCAGCTCCTGACAAACGTCCT
GGAAACGCTTCGGGGCGACGGGAACGTGCTGATAGCTGTGGACACAGCAGGCAGAGTTCTGGAGCTTGCT
CAACTCCTGGATCAGATTTGGAGAACTAAAGATGCCGGGTTGGGCGTTTACTCGCTGGCTCTCCTGAACA
ACGTCAGTTACAACGTGGTGGAGTTTTCTAAGTCGCAGGTAGAATGGATGAGTGATAAATTGATGAGATG
TTTTGAAGACAAAAGAAATAACCCATTTCAGTTTCGCCATCTCTCTCTGTGCCACGGTCTTTCTGACTTG
GCTCGAGTTCCAAGCCCCAAAGTTGTACTTGCCAGCCAGCCTGACCTGGAGTGTGGATTCTCAAGGGACC
TCTTTATTCAGTGGTGTCAGGACCCTAAAAACTCAATCATTCTAACTTATAGGACAACTCCGGGGACTTT
AGCACGTTTCTTAATCGATAATCCTACTGAGAAAGTTACAGAAATCGAGCTGAGGAAACGTGTGAAGCTT
GAAGGGAAAGAACTTGAGGAATATGTGGAAAAAGAAAAACTCAAGAAAGAAGCTGCTAAGAAACTGGAGC
AGTCGAAAGAGGCAGACATCGACTCCAGTGACGAGAGTGACGTGGAGGAAGACGTGGACCAGCCATCGGC
TCACAAGACAAAGCACGACCTGATGATGAAGGGGGAAGGCAGCCGCAAAGGGAGCTTCTTCAAACAGGCC
AAGAAGTCCTACCCCATGTTTCCTGCCCCAGAGGAAAGAATTAAATGGGACGAGTATGGCGAGATCATCA
AACCAGAAGATTTCTTAGTGCCAGAACTTCAGGCTACTGAAGAAGAAAAAAGCAAATTAGAATCTGGCTT
GACAAATGGAGAGGAACCCATGGACCAGGACCTGTCTGATGTTCCCACCAAGTGTGTTTCTGCAACAGAG
TCTATTGAGATAAAAGCCAGAGTTACTTACATAGACTATGAAGGACGCTCCGATGGAGACTCCATTAAAA
AGATCATCAATCAGATGAAGCCACGGCAGCTCATCATTGTCCACGGCCCACCAGAGGCCAGCCAGGATCT
GGCCGAGTGCTGCCGTGCGTTTGGTGGGAAAGATATTAAAGTGTACATGCCAAAGCTGCACGAGACCGTC
GATGCCACCAGTGAAACGCATATCTACCAGGTAAGATTAAAAGACTCACTTGTCAGCTCCCTTCAGTTCT
GTAAAGCTAAAGATGCCGAGTTAGCTTGGATAGATGGCGTCTTAGACATGAGAGTTTCCAAAGTGGACAC
GGGAGTTATTTTAGAAGAAGGAGAGCTCAAGGACGATGGAGAAGACTCTGAAATGCAAGTGGATGCTCCA
TCCGATTCTAGTGCCATGGCCCAGCAGAAGGCCATGAAGAGTCTGTTTGGAGAGGACGAGAAAGAGTTGG
GTGAGGAGACTGAGATCATCCCCACGCTGGAGCCTTTGCCACCTCACGAGGTTCCTGGACATCAGTCAGT
TTTTATGAATGAACCAAGACTGTCTGACTTCAAGCAAGTTCTTTTGCGGGAGGGGATTCAAGCGGAATTT
GTAGGGGGCGTACTTGTCTGCAACAATCAAGTAGCAGTTCGCAGAACAGAAACTGGACGCATCGGATTAG
AAGGCTGCCTTTGTCAAGACTTTTATAGGATACGAGACCTTTTATATGAACAGTATGCCATTGTGTAAAG
GACATGATGTCAAGATGTGTCTGCTTGACCTTTCTCAGGAAGAAAGGATTCTCATCTGAGGCTAAACTTT
TGCTGTCTTGTTTTGTAACATACAAAAAGAATCTGCCAGAAAACGTGAGCATGTACTAGATTTTGAAAAA
TATGAATCAAGGGCCTGGGGTGTAGCTCAGTGGTAGAGCTCTTGCCTAGCATGTGCAAGGCCCTAGGTTT
GATTCTCTGTCCTGAATAAAGAAAGAAAGAAAATGTAAATAGAACCTATTTTGTAAATGCTCTTGCCTAG
CTCTGAATGCTAGAGGCCCAACGAAGAGACAGGCCCAGAGCCAAGGGGATTGGTGTCCTCTGCAGGTCCC
TTGTTCCAAGAGCTCATTACTTGAAGAAGAAAAAGGAGAAAACAAACAAACAAACAAAAGAACAGTGCAA
CTTAGCAAACCTGTTGATGGCCTTACAGAAACTGGTGTGTGCACATTTGTGTGGACAGTTTCTTGTGTTT
TCTGGAATAAGAAGGGAGAATTGTATAGAAAGAGTATGCTATGTACGATAAAAGAAGCCTCGTGGAACAT
TTTTCTTGAGAAGGGGTGACGTGCGGCTGCTCCTGTGAGCTCTGCTCCTCGTGGAGCCCTCTCTACCTGT
GCAGTGGGAGGCAGTACACAGTTAGTTTAGAAACACATTTTTATTTCTCCCATTTCTTGTTTATTAAGAT
TTTTGTTGTTGTTCACTTTGAATTTATAACCTCATCATTTGAATAAATGTTATCTAAAAGAAAGCCTCTA
AGCTGAGTGTGGTACGTGCGCTTCTAATCCCAGCACTCAGGAGGCTGGTGTAGGAGGACTGTGAATTAGA
GGCCAGCCTGAGCTGCATGGTTAGAGCCTGTCTCAGCCAGCAAGAGGAGAGCCTGCTGTGTTACCAGGTC
TGTACATATTTTATTTAGACTCATCTTAACTATTGGTCCGGTAACTGTCTCTGAAACCATCCAATGCTCG
GTCTTTTTAAAAAGCAAATGTGGAAGCTCGCATTTTTATAAGGTAACAGTGTGATTTAATTAAAGGTTGT
AAATGGTTTCCTTTCTGAACTTGTTTTTTAAGTTTATGTAAACAGTGGTTGGATTTTATGCTTATTTTTA
CAAAAATAGTACTGAACCTGGGGAATTGCCACCCTCGATACAGTACAAATGAATTCTGTTGGAGAGTAAA
AACTGAAAATATGTAATTCTGTTGACTTGAACAATGAACCATGCTGTCCTGTTGTAGTTTCCCAGACTAA
TTTTTAGAAAGTAGCATGAACAAGGCAATCCTTGATGCCTTACGTGGAAGCCGTCTTCTCTACACTTAGC
ACTCAGAGAGGCCTCACTCTTGTTTAACTTTGGAACTATGTCTATTTCAACCCAGTGATCTGCTATCGGT
CTAGAATTAGTCTTTTATTCAGCTTCATGTGCTAACAGAACCTTCTCTTGTGGATTATAGCCCTGAAGCA
AAGTTTGTAGCCTTTTGATACTGAAAACCAGATGCACAAAATAGTGTTGCAGAGATGAGTGTAAAGAGCG
TATTGTCCTTTTATCAGCCATGAAACATTCCTCTTTCACTCCTGTTACTAGATAGAGGAGGCCTATAATT
ATATTTCCATTCCAGGGGAAGAAATCCTGCGGTTGTTACATGCTATAAAGCTCTGCATATACCTATTACA
TGGTAATTATATCTAAAACTATTTCTTGCCTAACCTTTCTGCTGACCTACGAACAGGAATCAGACTTTAA
AATATTCCTTGAAGATGATTGTTGTACAATAATGTCATTGGAGAGCAATCCAACTGCCTGTGTCTAGATG
ACATCATCCAAAAATTCCTGAAATGGAGACCTTCACTCTAGCCTCAGCTACTTAAGAAAAGCATGACTTC
TAAAGACAACAGTGAGATAAGTCATGAGAGCAGAGAGAGTCTCAGATGCAAGATAAACACAGGGTGTGAG
ACACCAGTCGATAACTGCACATAGTTTTCTTATAAAGAAATTGTATCTGGGCACGGCACGGTGGCACATA
CCTGTAATTTCATCAACTTCATTCAAACTTGGCTGAAGGCCAGTCTGGACCACATACGACCCTGCTTCAA
AAGAAGGAGAAAGGGGATGGGGACATAGGTCGGTGGAAGAGTGCTTACCTAGCATGTGTGAGGCCCTGGG
TTTGACCCCCAGGTCTAGAGGTTGGGGGGTTACTTAGTGTATCTGTTGCTGTATGGTTATACATTTTTGC
AATTATTCCTATATTTTTGTGACTCCGTAGGTGACCTGAGACAATAAAGAAGAAATTAGTTTGTAAAAAA
AAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3497854 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3497854 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14284 same embryo
 EMAGE:14285 same embryo
 EurExpress:euxassay_004101 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS