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EMAGE:14292

Sdf2 stromal cell derived factor 2 ( MGI:108019)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292
"Pseudo-wholemount" of euxassay_004112. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004112_01 euxassay_004112_02 euxassay_004112_03 euxassay_004112_04
EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292
euxassay_004112_05 euxassay_004112_06 euxassay_004112_07 euxassay_004112_08 euxassay_004112_09
EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292
euxassay_004112_10 euxassay_004112_11 euxassay_004112_12 euxassay_004112_13 euxassay_004112_14
EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292 EMAGE:14292
euxassay_004112_15 euxassay_004112_16 euxassay_004112_17 euxassay_004112_18 euxassay_004112_19
EMAGE:14292 EMAGE:14292 EMAGE:14292
euxassay_004112_20 euxassay_004112_21 euxassay_004112_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14292Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14292_wholemount_strong.wlz
14292_wholemount_moderate.wlz
14292_wholemount_weak.wlz
14292_wholemount_possible.wlz
14292_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14292_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5582
Entity Detected:Sdf2, stromal cell derived factor 2 ( MGI:108019)
Sequence:sense strand is shown

>T5582
GTCATTTCCTGCTGTCTTTTCCCCTCCGGCGTCTAGGGCTTTGGTTCCGAGTCCGCGAACGCCTAAGGAA
CGCAGCCGCCACAGAGCACCCAGTACAAAGTGAGGTCCCGAAGGCCTCCCGGGCCAGCGTGTTCTTTAAG
CCGCTCTCGCCAAAGGAACCATAAAGATTCAGGTTAAGGAGTCTTCTCTTCCATCTTGGCGTAGTTCTAC
CCTCGGCTTCCGGTTCCGGGGACGGGCCTAATTTTCTTGGATGATTAGTTCTCTCGGATCTAGGATGGCT
GTCTTGTCGCTTCTGTTGTTGGGTGGTTTGTGGAGCGCTGTGGGAGCGTCCAACATGGCTGTCGTTACTT
GCGGCTCCGTGGTGAAGCTACTCAATACACGCCACAATGTCCGACTGCATTCTCACGACGTGCGCTATGG
GTCAGGTAGTGGGCAGCAGTCAGTGACAGGTGTGACCTCTGTGGATGACAGCAACAGTTACTGGAGGATA
CGGGGGAAGACAGCCACAGTGTGTGAAAGGGGAACCCCCATCAAATGCGGGCAGCCCATCCGTCTGACAC
ACATCAACACAGGTCGAAACCTGCACAGCCACCATTTCACTTCACCTCTCTCTGGAAACCAGGAAGTGAG
TGCCTTTGGCGAAGAAGGTGAAGGCGACTATCTGGATGACTGGACAGTGCTCTGTAATGGACCTTACTGG
GTTAGAGATGGTGAGGTGAGGTTCAAACATTCTTCCACTGACGTACTGCTGTCTGTCACAGGAGAACAGT
ACGGACGACCCATAAGTGGACAAAAAGAGGTACATGGTATGGCCCAGCCAAGTCAGAACAACTACTGGAA
GGCCATGGAAGGCATCTTCATGAAGCCCAGTGAGTTGCTGAGGGCAGAGGTCCATCATGCAGAGCTGTGA
CTCTAAATACTCTGAGCCACTGTCGCCACACAGTGTTTGTAGACATCTGCTGCTGCTTTACTGCGGGATC
CCTGCTCCAGGTCCTCTGAGCGTGCTGCCTTGGGACCTGCAGCCCTTCACACTTGAATTGGTTGCTCTCC
CAGGCTTAGTCAGTTCTCTCGGGAAAGGACTCACTCGTCTGTGAAGGTGGAGATAGCTTTCTTCATGCTG
GTAAAAGAAGTTGAGGAGCTTGCCTGTCTTAGCTGGGAAGTGTAACTCCGCAGGAACTGGGCATCATGGA
TTCTTAATTTGTGATTTCTCCTGTTTTGTCTTTCTCCAAAATAATGAATAAATAAATAAATAAAAAGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6485217 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6485217 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14290 same embryo
 EMAGE:14288 same embryo
 EMAGE:14287 same embryo
 EMAGE:14291 same embryo
 EMAGE:14289 same embryo
 EurExpress:euxassay_004112 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS