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EMAGE:14340

Upk1b uroplakin 1B ( MGI:98912)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340
"Pseudo-wholemount" of euxassay_004171. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004171_01 euxassay_004171_02 euxassay_004171_03 euxassay_004171_04
EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340
euxassay_004171_05 euxassay_004171_06 euxassay_004171_07 euxassay_004171_08 euxassay_004171_09
EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340
euxassay_004171_10 euxassay_004171_11 euxassay_004171_12 euxassay_004171_13 euxassay_004171_14
EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340 EMAGE:14340
euxassay_004171_15 euxassay_004171_16 euxassay_004171_17 euxassay_004171_18 euxassay_004171_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14340Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14340_wholemount_strong.wlz
14340_wholemount_moderate.wlz
14340_wholemount_weak.wlz
14340_wholemount_possible.wlz
14340_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14340_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
pericardium
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18
greater sac mesothelium
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19
omental bursa mesothelium
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19
pleura
strong strong
regionalstrong expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18
epidermis
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19
pharyngo-tympanic tube
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 14 15 16 17 18 19
pharynx epithelium
strong strong
regionalstrong expression: see section 09 10 11 12 13 14
bladder
strong strong
regionalstrong expression: see section 11 12 13
urethra of male
strong strong
regionalstrong expression: see section 12
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7849
Entity Detected:Upk1b, uroplakin 1B ( MGI:98912)
Sequence:sense strand is shown

>T7849
CGGAGAAGAAGGCAGAGGAGACCAGGCAGCCGGTCTTTTAGAAAATCCTGAAGATGGCCAAAGACGATTC
CACTGTTCGTTGCTTCCAGGGCCTGTTGATTTTTGGACACGTAATTGTTGGTATGTGTGGCATCGCCCTG
ACAGCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATG
ATGATATCTTCGGGGCAGCTTGGATAGGCATGTTCGTGGGCATCTGCCTCTTCTGCTTGTCCGTTCTAGC
CATAGTAGGAATTATGAAGTCCAACAGGAAAATCCTCTTGGCGTACTTCATCATGATGTTTATAGTGTAC
GGTTTTGAAGTGGCATCTTGCATCACAGCAGCAACACAACGCGACTTTTTCACAACCAACCTCTTCCTGA
AGCAGATGCTGATGAGGTATCAAAACAACAGTCCCCCAACCAATGACGACGAATGGAAGAACAACGGGGT
CACCAAGACCTGGGATAGGCTCATGCTGCAGGACCACTGCTGTGGTGTAAACGGTCCGTCAGACTGGCAG
AAATACACCTCTGCCTTCCGGGTGGAGAATAACGATGCTGACTACCCCTGGCCTCGGCAGTGCTGCGTCA
TGGACAAGCTTAAAGAGCCTCTCAACCTGGACGCTTGCAAACTTGGAGTGCCTGGTTATTACCACAGTCA
GGGCTGCTATGAACTGATCTCTGGACCAATGGACCGGCATGCCTGGGGAGTTGCCTGGTTTGGATTTGCC
ATCCTCTGCTGGACTTTTTGGGTTCTCCTGGGCACCATGTTCTACTGGAGCAGAATTGAATATTAAGCAC
AGACAGTGTCTCCACCATACCTCCCTCCCTCCCTGGGTGACTCTGAATTTGGTGCTGGAACCTGCTGTTT
CGTGACACGCCCTCTGTGTGCTCTGCCCCGTGACTCGTGCTTGTTTCTCTCAAATGCCAGTTCCGGTGGA
ATGGGCTTCCTTTAGGCTTTCAAGATGCTGCAATCCTTAGCAGAAATATTTCTCATCCTTGCCTAAGATT
CCGAAATGTATTTATATACTATAAGACAGAAGGTGTACTATATATGTACTATATATAATATAGTACTTAC
GTGTACTATATAAGACAGAAAGTTTGGAGAATGGAGACGACTCTCATTCCTGTCTATGTTTAATGTGGAG
GCACAATGATATTCAAAGGAACCTGCTTCACCATTCATTATAAGCTCTGTCTGTATTGAGCAGCAAATTC
AAGAAACAGAGAGCCCATCTCTCTATTTTCTTCAACCTTGAAAGACTTTTGTTTGTCACTGTGTAGGCTG
GGGGAGGAGGGTTGCACTGTGAAAGAGGAGGAAATGGCAGTCATGCTTTCTTCTGCCTCTGGTTCTGCTG
TGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCAGTACAACCCTTGATTTTCAG
ATTTCCTCTCATGCCCTGTGGAGTGATGTGCATTGAGTGTATGGAAACTTTGGGGGTGTCGGCCGTGCCC
GATTTACATCAGCTCAGTCTTTGCCCTCAGAGGTTTCAACCGGAAACACTTCCCAAACCGCGGGATCCAT
GCCAGCTATTCAAACAAGTGATTTATAGGGTCTTTTGTTTGCTGTCAAAATAGTTTGCTCACATTAACGA
TCCTGAAGGAAGTCCTGACAAGTCACCATTTGTTTGCCTATCCATAAATAAAGGAGCCCATAAAATAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6389837 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6389837 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14339 same embryo
 EMAGE:14343 same embryo
 EMAGE:14341 same embryo
 EMAGE:14342 same embryo
 EMAGE:14344 same embryo
 EurExpress:euxassay_004171 same experiment
 MGI:4829109 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS