Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:14377

Pdss1 prenyl (solanesyl) diphosphate synthase, subunit 1 ( MGI:1889278)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14377
euxassay_004277_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14377Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14377_wholemount_moderate.wlz
14377_wholemount_weak.wlz
14377_wholemount_possible.wlz
14377_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14377_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7208
Entity Detected:Pdss1, prenyl (solanesyl) diphosphate synthase, subunit 1 ( MGI:1889278)
Sequence:sense strand is shown

>T7208
CGGACGCGTGGGTGGCTATGCGCTGGTCGTGCTGGCGGCGTGGCTGCTCCTGGAGGCCGACCGCGGTCGG
GAGCCCGCGGCGGGAACGACCTGGCTGTGTGGAGCCTCTCGGAACACGTGCCGCCTCGGACACCCGCGCG
CAGATACCCTATTTTAGTCTTATGAAGATTTTAATGTCTGCCTCCCCAACTATGCATAGTATATCACAGT
TTCATCAAAGGACACCAGCAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTT
TAAACTTGGCTGGAGAGACTTGAAAGGTCTGTATGAAGACATTAGAAAGGAGCTGCACATCTCCACCAGA
GAACTAAAGGACATGTCCGAATACTACTTCGATGGCAAAGGAAAAGCCTTTAGACCGATTATTGTGGTGC
TAATGGCCCGAGCGTGTAATATTCATCATAATAATGCCCGAGAGATGCAAGCCAGCCAGCGCTCCATAGC
CTTAGTTGCAGAAATGATCCACACTGCTACTCTGGTTCATGATGACGTTATTGATGATGCAAGTTCTCGA
AGAGGAAAACATACAGTTAATAAAATCTGGGGTGAGAAAAAGGCTGTTCTTGCTGGAGATTTAATTCTTT
CTGCAGCGTCTGTAGCTCTGGCACGGATTGGAAACACAGCTGTTGTATCTATGTTAGCCCAAGTTATTGA
AGATTTGGTGCGTGGTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAATGAAAGGTTTGCCCACTAC
CTTGAGAAGACCTTCAAGAAGACAGCCAGCCTGATAGCCAACAGTTGTAAAGCAGTCTCTGTCCTGGGTT
GCCCTGACCCAGTGGTGCATGAGATAGCCTATCAGTATGGGAAAAATGTTGGAATAGCTTTTCAGCTCAT
AGATGATGTATTGGATTTCACCTCATGTTCTGACCAGATGGGCAAGCCAACATCTGCAGACCTGAAGCTA
GGCATAGCCACTGGCCCTGTCTTGTTTGCTTGCCAGCAGTTCCCAGAAATGAATGCTATGATAATGAGAC
GGTTCAGTTTGCCAGGAGATGTGGACAGAGCACGACAGTATGTATTACAGAGTGATGGCGTGCAGCAAAC
AACCTACCTCGCCCAGCAGTACTGCCACAAAGCTGTGAGAGAGATCAGGAAGCTTAGACCATCTACAGAA
AGGGACGCCCTCATTCAGCTTTCAGAAAGTGTGCTCACCAGAGATAAATGACAATTCCTCCTCTTCTTTC
TGGCAGCTATTTTACCAGACTGTGCCTAATGATTTTGTGAAACACTATTTGCTTCATGTGCAGAAAACCA
AAAATCATTTTAAGAAATAATTTCAACCTTATTGATGGGCAATTTTTATTGGCAAAGTTTTTCGGAAAAC
TTTTTAAATGTAATTAAACCAGTGTCATTATAGTCCTATAAATTCTAATCGAGGTATCCTGATGGTTATA
TGTGGTATTGTTTACACTGTTAATGCCCACATGTAAAGCCATTACACAAATAAATAATCAACGTTAAAAA
AAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4039464 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4039464 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14379 same embryo
 EMAGE:14381 same embryo
 EMAGE:14378 same embryo
 EMAGE:14380 same embryo
 EMAGE:14376 same embryo
 EurExpress:euxassay_004277 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS