EMAGE mouse gene expression spatial database

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EMAGE:14397

9130019O22Rik RIKEN cDNA 9130019O22 gene ( MGI:1926171)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004242. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004242_01	euxassay_004242_02	euxassay_004242_03	euxassay_004242_04

euxassay_004242_05	euxassay_004242_06	euxassay_004242_07	euxassay_004242_08	euxassay_004242_09

euxassay_004242_10	euxassay_004242_11	euxassay_004242_12	euxassay_004242_13	euxassay_004242_14

euxassay_004242_15	euxassay_004242_16	euxassay_004242_17	euxassay_004242_18	euxassay_004242_19

euxassay_004242_20	euxassay_004242_21	euxassay_004242_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14397_wholemount_strong.wlz

14397_wholemount_moderate.wlz

14397_wholemount_weak.wlz

14397_wholemount_possible.wlz

14397_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14397_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7197
Entity Detected:	9130019O22Rik, RIKEN cDNA 9130019O22 gene ( MGI:1926171)
Sequence:	sense strand is shown >T7197 GCGGTCTTCAGGAAATCTCCACTGTGCTCCTATCAGTTTTCAATTTTCACCTACATTAAGGTGCACACAG ACCTGGTTCCTGTCCCTTTTCAGCCCTGGTACCCGACCACGGACACCTTGGACTGGGCAGGCAATCCCAG GCGTGCGAGACTGACCCAGGGTCTGTGAGGGGAGTCCCCATGGCGCAGCGGATTGCACTGGACGAGGCCT CGGTACCGCCTGTGTTCTGTAAACCCTGGGCTGTGAACTTCGCGGACGTGGCCGTGTACTTCTCCCCGGA GGAGTGGAGGTATCTGCGGCCGGCGCAGAGAGCCCTGTACCGAGAGGTGATGCGCGAGACCTACGGTCTC CTGGCCTATCTCGACGTCGGATGCGCCAAACCAGCACTCATCTGCTGGGTGGAGGAAGAGTCCGAAGTGT GGGGACCCTGTGCCCAGGATCCAGAGGTGGCCATGTGCAGGACAGAAGTTCACTCAGATTGCAGGCACGA GAAGGAAAGGAAGAGACCAAGGGAAGAGACTGAAGCAATGCAGAAGACATTTTCTCCAGAACCTGGGCAG AAGGAGCCACAACTCTCATTTGCTGTCTCCCCTAGTGGTGTTCAAGCCACGGTCCTAAGGGCAGACAAGT GTCACGACTGCAATTTGTGTGGGAAGAGTTTTGCCCGGCGGTCCACGTTGGAGGCACACATGTACACTCA CACAGGTGAAAAGCCGTTTCAGTGCCCAGACTGCAACAAACGATTTGGCCGGTATTCTTCCCTGAGCACT CACCGAGCCATACACCGAGGGGAACGACCGCATCAGTGTCCTGACTGTGGGAAGAGTTTTACCCAGCGGT CCAAACTGGTGGCACACATGTACACTCACACAGGTGAAAAGCCGTTTCAGTGCCCAGACTGCAACAAACG CTTCAGCCGGCCTTCTTCCCTGAGCACTCACCGAGCCATACACCGAGGGGAACGGCTGTATCAGTGTCCT GACTGTGGGAAGAGTTTTACCCAGCGGTGCACTTTGGTGGCACACATGTACTCTCACACAGGTGAAAAGC CGTTTCAGTGCCCAGACTGCAACAAACGCTTCGGCCGGTATTCTTCCCTGAGCTCGCACCGAGCCATACA CCGAGGGGAACGGCCACACCAGTGTCCTGACTGTGGGAAGGGTTTTACCCAGCGGTGCACATTGGTGGAT CACATGTACTCTCACACAGGCGAAAAGTCATTCAATTGCCCTGATTGCTGCAAGTCCTTTGGTCGGCCAT CTTCCCTGAGCAGGCACCGGGCCATACACCGAATGGAGCAGCCTCATCGCTGCTCTCACTGTGGCAGGAC TTTCACACGGCGCTCTTCACTCACCAGCCATCTCCGTGTCCACACTGGGGAGAAGCCTTACTGTTGTGCT GATTGTGGACGCTGCTTCAGCCAGAGATCTGCGTTCCGTGAGCACCAGCGAGTGGTACACAGCGGTGTGA CCCCCTTTTCTTGCACTCACTGTGGCAGTGCCTTTGCGGATTCCAAATATCTTCGGCGGCACATGCGCAT CCATACAGGTGAAAAGCCTTATTCATGCCCTGATTGTGGTCGCTGCTTTCGCCAGAGCTCTGAAATTCCA GCCCATAGGAGGACCCACACTGGCGAGCGTCCTTACCCCTGCCCTCAATGTGGCAGGCAGTTTCGCACAA AGTCAGCTATGACAAGCCACCAGTGGGTCCATAGACCAGGAGCTAAAGGCCATAAGGACAAAAAAGCCAA TCAGTTATCTATATCCCTGGACCCTAGACAAGAGGACCCGGATCCACCTGTGGGCTTCTAGCATTACCCA GAGTTATTCCAAAAGTGCGGGTGATGGTCTTAAAGGCGCCAACATAGAGGGTGAGATATGTACATTATGA AGCCCAGAGAATGACCTATAGCATCCTCCAGAAGTCACAGACGTTCTAGGTACTGCTGGTCTGGGCACCG GGTAGTCTTTTTGGTGATTTTCAGATGCATCTGCACACACTCCGGATGTACCGTCATCTTGGCGTCTATT GGGCTGGGCTGGGCTGGGCAACCCCACTAGAGCTCCATGAGAAGCGAGGGCCTTTTCCTGGCTCAGAAGT ATTGAGAAGCCTGAGGATGAAGAGAGCCTCGTTGAAGTCATTGTGTCTTTAATGCAGAGGCTAAAGTTGA TGGCTCTGTGTGGGTTGAGCCAGCTGCATTCTCCGGGATTGAGTTACTGGTCAAGAGCCTGGTGTGGTGG TTCCTGCCTGTGATCCCCGCACTGGGGAGGTAGAGACAGGAAGATCAGAAATTTGAGACCAGTTTGGGTC ACCTGAGACTGCATCTAAAAATAAATAAAATTACAACTGTAATTTATTACGGTTTAAAAACCAAAGTATC TATGACATGTACCAAAGGCCTAAGTTTGTAGGTTCTCTGGAAAAAATCCAAAATATTCAGCCCAGCAAAC AAGACAGAAGAGTTCTGTGGTCCATTCTCAGCACTCCATACACTGTGTGCCGGCACATGCTTGCTTGCAG CACTTGGTAGCTGGTGGCACAAGGATGTTCAGAACCTTATTTAAGGCTGCCCTCTGTTACAGACAGACAA GATGACACACACACCAGGTTCAGATCAGATCACAGCTACAGCTCCCATGAGTTGATTTCAGCATTGGAAG GAGAGAACCAGGTCTGGAAGACAGTGGATTTTAGGGTTTTCTGAATCAAAGAGGGCTTGTATGAAATTGG ATGGCGTAGAATGAAAAGGAAAGAAACAAATTAACCCATAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4038184 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4038184 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14401 same embryo
	EMAGE:14400 same embryo
	EMAGE:14398 same embryo
	EMAGE:14396 same embryo
	EMAGE:14399 same embryo
	EurExpress:euxassay_004242 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source