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EMAGE:14399

Rer1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) ( MGI:1915080)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399
"Pseudo-wholemount" of euxassay_004257. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004257_01 euxassay_004257_02 euxassay_004257_03 euxassay_004257_04
EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399
euxassay_004257_05 euxassay_004257_06 euxassay_004257_07 euxassay_004257_08 euxassay_004257_09
EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399
euxassay_004257_10 euxassay_004257_11 euxassay_004257_12 euxassay_004257_13 euxassay_004257_14
EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399
euxassay_004257_15 euxassay_004257_16 euxassay_004257_17 euxassay_004257_18 euxassay_004257_19
EMAGE:14399 EMAGE:14399 EMAGE:14399 EMAGE:14399
euxassay_004257_20 euxassay_004257_21 euxassay_004257_22 euxassay_004257_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14399Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14399_wholemount_strong.wlz
14399_wholemount_moderate.wlz
14399_wholemount_weak.wlz
14399_wholemount_possible.wlz
14399_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14399_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7188
Entity Detected:Rer1, RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) ( MGI:1915080)
Sequence:sense strand is shown

>T7188
TACAGAATGTCTGAAGGGGACAGTGTTGGAGACTCTGTCCATGGGAAGCCCTCGGTGGTGTACAGATTTT
TCTCACGGCTTGGACAGATTTATCAGTCCTGGCTGGACAAGTCTACCCCCTACACAGCCGTCCGGTGGGT
TGTGACACTGGGCCTGAGTTTTGTCTACATGATTAGAGTTTACCTGTTACAAGGTTGGTACATTGTGACC
TACGCCTTGGGAATTTACCACCTAAACCTTTTCATTGCGTTCCTTTCTCCCAAAGTGGATCCTTCCTTGA
TGGAAGACTCAGATGACGGCCCTTCATTACCAACCAAACAGAATGAGGAATTTCGTCCCTTCATTCGAAG
GCTTCCAGAATTCAAATTTTGGCACGCAGCTACAAAAGGCATTCTTGTGGCTATGATCTGTACCTTCTTC
GAGGCTTTTAACGTCCCAGTGTTCTGGCCGATCCTGGTGATGTACTTCATCATGCTTTTCTGTATCACAA
TGAAGAGGCAAATCAAGCACATGATTAAATACCGGTACATACCATTCACACACGGGAAGAGGAGATACAA
AGGGAAGGAGGACGTGGGCAAGACATTTGCTAGTTAGAAGCTGGACTGATTCTCACACGGACTCAAGAAC
GGTTTTGAGCCATTGTAACAATGCCTTTTTCTTCACATAAAGTAGTTGATTATGAGGAAGTTGAATTTTC
TTTTTAAGAGGAGCCTCAATGATTTGTATCTGAAATATCAGGTTCTTGAAGAAACTGGCATTTAAACCAA
ATTGCATTGATTTCTTTTTCAGTGATGTTCATGTGTTTGAAATGGACAGATTGTAGTGAACCGTAGGCTT
GGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCTGGAGAGCTGCCTTCCTGA
CCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAAGCCAGCCTGCTTCCTGCTGTGAAAAAGACTGTAC
CGCTTTGAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATCTCATCTCACTAGAG
ATGTTTCTCGAATTGGCCTCGATCATAATGACTCAAAACTATGTTCTTAACTACCATGATTGCTTTTGAG
GGCCTGGAATTATAAATATATATTATATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4036721 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4036721 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14401 same embryo
 EMAGE:14400 same embryo
 EMAGE:14398 same embryo
 EMAGE:14397 same embryo
 EMAGE:14396 same embryo
 EurExpress:euxassay_004257 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS