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EMAGE:14544

Efcab9 EF-hand calcium binding domain 9 ( MGI:1916556)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14544
euxassay_005424_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14544Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14544_wholemount_moderate.wlz
14544_wholemount_weak.wlz
14544_wholemount_possible.wlz
14544_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14544_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9816
Entity Detected:Efcab9, EF-hand calcium binding domain 9 ( MGI:1916556)
Sequence:sense strand is shown

>T9816
AGAATTCTCCATTCTGTATCAGGTTGCCAGAGCCTCCGGCTGAAAGCTGCCGCCATGAAACTGACTCCGG
GGTGTTTTCTGTGGTACCTTTACATGGACAAAATCTACTGCTTACTGTCTTTGAGAAACGTGAAAGCCTT
GATGGTGTACTTTCATCTTCTGGATGTGCACCACAGGAACACCTTGAATGATGTGCTCTTCTTTCATTTC
CTCCAGCACGTGACTAACCTGAACAAGTCACAGATCGGGATGATATTTGACCTCCTGGACTGGACAGCTG
TAGGAGAGATTGGTTTTGACCAGTTCTATGTGTTGATTTGCATACTGCTGGCACATCAGGACCATCTGGA
AGACCACTTTATGTACCGCCATTCCCGGCCAGTCTTTGAGCTGCTTGATCTGGACGGGGAGATGAATATA
GGTGCGGCCAATTTCCAAAACTACAGATTTCTCTTCAATATTAAAAAGCAGGAACTCCGAGACCTTTTCC
ATGACTTTGACATCACAGGTGACCGACTGCTTAATTACAAGGAATTTAAGCTGTACACAATCTTCTGCAC
CGACAAATCCATAGACAGAAAGAAAAGGAGGAAAGACAGAGAGGCAGCGAGAGAGAGAGAAAAAGAGAAA
GGGAAAGATAAAGAGAAGTATCTTCATCTCAAGAAGATATATTCATCTATGTTAAGCCACAGGAGTATCC
TGTGACACACGAGTGAGCATGGATAATTAAAATGAACATGGCCACAATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6771929 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6771929 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14546 same embryo
 EMAGE:14545 same embryo
 EurExpress:euxassay_005424 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS