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EMAGE:14660

Trim39 tripartite motif-containing 39 ( MGI:1890659)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14660
euxassay_005603_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14660Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14660_wholemount_strong.wlz
14660_wholemount_moderate.wlz
14660_wholemount_weak.wlz
14660_wholemount_possible.wlz
14660_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14660_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6726
Entity Detected:Trim39, tripartite motif-containing 39 ( MGI:1890659)
Sequence:sense strand is shown

>T6726
CACACACACTGTAAATAGACCAACAGATGAAAAGGTGGAAATGGGAGAATACCAAGATGGGGCTTCATCT
AGACCTATGGCTTACTGGGAGCTAATGTCAGGAAACAAAATAACCCTCCAACTAACACTTCTTTCCTCTC
TCCCTGCCTCCAAGTTATAATGGCAGAGACAAGTCTGTTAGAGGCTGGAGCCTCTGCAGCCTCCACAGCC
GCTGCTCTGGAGAACCTGCAGGTGGAAGCAAGCTGTTCTGTATGCCTAGAGTATCTGAAGGAGCCAGTTA
TTATTGAATGTGGGCACAACTTCTGCAAAGCGTGCATTACCCGCTGGTGGGAAGACCTAGAGCGGGACTT
CCCTTGCCCTGTCTGTCGGAAGACATCCCGATACCGGAGTCTCCGGCCTAACCGACAGCTAGGCAGTATG
GTGGAAATCGCCAAGCAGCTCCAGACGGTCAAGCGGAAGATCAGAGATGAAAGCCTCTGCTCCCAGCACC
ACGAACCTCTTAGCCTTTTCTGCTATGAAGACCAGGAGGCTGTCTGTCTAATATGTGCAATTTCTCATAC
CCACCGGCCCCACACCGTCGTGCCGATGGATGATGCTACACAGGAATACAAGGAGAAACTTCAGAAGTGC
CTGGAGCCCCTGGAACAGAAGCTGCAGGAGATCACCTGCTGCAAAGCCTCCGAAGAGAAGAAGCCGGGGG
AGCTCAAGAGACTGGTGGAGAGCCGCCGGCAGCAGATCTTAAAGGAGTTTGAGGAGCTGCACAGGCGACT
GGACGAAGAGCAGCAGACACTGCTTTCACGACTGGAGGAAGAAGAACAGGACATTCTACAGCGACTTCGA
GAAAATGCTGCTCACCTTGGGGACAGGCGCCGGGACCTTGCCCACTTAGCTGCTGAGGTGGAGGGCAAGT
GCTTACAGTCAGGCTTCGAGATGCTTAAGGATGTGAAAAGTACCCTAGAAAAATGTGAGAAGGTGAAGAC
CATGGAGGTGACTTCAGTATCCATAGAGCTGGAAAAGAACTTCAGCAATTTCCCCCGGCAGTACTTTGCC
CTAAGGAAAATTCTTAAACAGCTAATTGCTCCACTCTGGCTTCTTCCGCCAGCGGATGTGACTCTGGACC
CCGAGACGGCTCACCCTAACCTCGTCCTGTCAGAGGATCGGAAAAGCGTCAAGTTTGTGGAGACAAGACT
CCGAGACCTCCCTGACACACCGCAGCGTTTCACTTTCTACCCTTGTGTCTTAGCTACTGAAGGCTTCACC
TCAGGTCGACACTACTGGGAGGTGGAGGTGGGTGACAAGACCCACTGGGCAGTAGGAGTATGCCGGGACT
CTGTGAGCAGAAAGGGCGAACTGACTCCACTTCCTGAGACTGGCTACTGGCGAGTGCGGCTGTGGAATGG
GGACAAGTATGCAGCCACCACCACGCCTTTTACCCCTTTGCACATCAAGGTGAAGCCCAAGCGGGTAGGC
ATATTCCTAGACTATGAGGCTGGCACACTGTCCTTTTACAACGTCACAGACCGTTCACATATCTACACCT
TCACTGATACTTTTACTGAAAAACTTTGGCCCCTCTTCTACCCAGGGATCCGGGCCGGTCGGAAGAATGC
TGCACCACTTACCATTAGGCCCCCAACAGATTGGGAATGACAAGAGATGCAGTTTAATTGGGGTGAGGCA
AGGTCAAGAGCGGTGGGCCTTCCTAACTGGCCTGCTAGAATATCTTGGTGTCTCCGTGGTTCCAGTCTTG
AGCCATCTTGAGAAACCACCTCGCATCTGGGATGGTTTGTGTGAGGAGTAAAGATAGGACTGGGCTGCAT
GACCAAGCACAGATGAGTGTCCCTCCTTACTGTAGTGGGAGAGTGGACTCCCAGGGGATTGTACTCTGGT
GTCCCGCAGGTTTCCTAGTGCACGGGGACAGGTTGAGAAAGCAAAAGCTTTCCAGAAACAAAGTCTATAG
GAAAGGGTCTTAACTTGCTTAAAATGCAGGAAACAGAAACCTTTAAAAGGCTTCTGTGACGCAGAATAGC
CTTGTTCCTTGTGGGAGCGCACAGGGGTCTGTATACCTCGGTGTCAGAAAGATGAGTGGCAGTTGCTGTC
ATGAGTCTAGAAGTCGAGGGGCTTTTCCGGGGCCAGAGCTTGAGCATTAAAGTTAGGAGAAGGATCAGGG
AAGAGGCTGAAGGAATGTTTCTAGGATGAATGAAGGGAAGGGGGTTTTCTTTGGTCTCTTTTCTTCTTAG
GGTAATTCTATCATTACCCATAGGATTAGCCAGAGGTTCAGATTTGGGGAGAAGGAAAGGATGGGGAAAA
AGGAGACTCCATGTCCCAAAGGCTTGCGTTATTCCTGTTTCCTGCAGTTGGCTGTCTCTAAAAAGTAGGC
TCCTCTTGCTTCCTTCTAAAGGTGAGATGGAAGCAATCCTGCAAGACATACATCTGAGCCGGGCGTGGTG
GCATACCCGGGAGGCAGAGACAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCA
GGACAGCCACAGCTATACAGAGAAACCCTGTCTCAAAAAACTCAAAAAGAAAAAGACATACATCGGTCCT
TCCATTGTTTCCCAAGGCAACTTGGAGAGGAGTCAGATATTAGAGGAGAGAGAAAGGTGTAGCTAAAGCC
TTGGCCTTAAGGAATGTTCCTAAGTGGTTATTCCCAACTTGTCCACCTTGCCCCCTGGCTCAAAGACCTA
AGGAAAGAAGGGAAGGTGATGGAGTCTTTCTCACCCATGAGAACAGGGTAGAAGAGGGTGGTTTGTGTAG
CAAAGGGCCAGAAGACAGCTAAGCTTCTATTTCTATCCTTCACCCTTTGACATTCCCCTTTTCAGAGAAT
GTAAATTATTTTAATTTTAGGCCAAAATAAACAACCCATAGGGTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3666785 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3666785 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_005603 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS