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EMAGE:14698

Hgsnat heparan-alpha-glucosaminide N-acetyltransferase ( MGI:1196297)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698
"Pseudo-wholemount" of euxassay_005727. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005727_01 euxassay_005727_02 euxassay_005727_03 euxassay_005727_04
EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698
euxassay_005727_05 euxassay_005727_06 euxassay_005727_07 euxassay_005727_08 euxassay_005727_09
EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698
euxassay_005727_10 euxassay_005727_11 euxassay_005727_12 euxassay_005727_13 euxassay_005727_14
EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698
euxassay_005727_15 euxassay_005727_16 euxassay_005727_17 euxassay_005727_18 euxassay_005727_19
EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698 EMAGE:14698
euxassay_005727_20 euxassay_005727_21 euxassay_005727_22 euxassay_005727_23 euxassay_005727_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14698Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14698_wholemount_strong.wlz
14698_wholemount_moderate.wlz
14698_wholemount_weak.wlz
14698_wholemount_possible.wlz
14698_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14698_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7287
Entity Detected:Hgsnat, heparan-alpha-glucosaminide N-acetyltransferase ( MGI:1196297)
Sequence:sense strand is shown

>T7287
CCCAGTTGTGGATGTGAAGGGCCTGTGGACGGGAACCCCCTTCTTCTATCCAGGGATGAACTCCATCCTG
GTGTATGTTGGCCACGAGGTGTTGGAGAACTACTTCCCCTTCCAGTGGAAGCTGGCGGATGAGCAGTCAC
ACAAAGAGCATCTCATTCAGAACATAGTCGCCACGGCTCTCTGGGTGCTCATCGCCTACGTGCTCTATAA
AAAGAAGCTGTTTTGGAAAATCTGACAGCACCCGCTGAAATACATAGCTAGAGGAGTCCAGGGGGTCTGG
GAGAAGAGCGGCGGCAGCCTCCCTCACAGAGGGGATTGCTTCCAGATGCTGCGTCCAAACCGATTTGCTT
AGACATCAGAAAGTTGCCTGTGTCTTTCTGACTCACATATCTATGCATCTGAAATGCCATGCTCTCCGCT
TTCTCCATTTTGTATGAAATTGCTATATTTGGAACATGTGTGGAAATCTTGTTTAACTTCTCAGAGATTT
ACTCTGGACATTTTGCCTCTGTGAAAGAGGCCAAGGTTGGTAGACTGTGCTTGATTCAGAGAGAACCCAT
TCCAAGCTTGGACAGCACCTGGGGTTTGGTCCCTGGCATCACAAACAAGCAAACAACAAAAAGAACCAAG
TCTTATTTCCTGAAAACTGACTTTCCACGTGTATGCGCATGCCGACCGTACCGCCGTGGTTTCATGGTCA
CAGACTATAAAGCTTTTTGAATGGACTGTGTCATGTTGTCTGATTTTATTTATTTTTTTTTTTATAGTAT
GAACTTTATTGTCTCTAGAAAGCCAAAGTGATTTTCCTTGTCCACTTTCACGGCTTTGATGGCCCCACCA
AATGCATCATTTAAAGCTACTCGCTTCTTTCCTCACTTGGAAGAAAGCTGAAATATAGATTTGTTATTGC
AAACCAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4167310 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4167310 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14700 same embryo
 EMAGE:14699 same embryo
 EMAGE:14701 same embryo
 EurExpress:euxassay_005727 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS