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EMAGE:14706

Pcif1 PDX1 C-terminal inhibiting factor 1 ( MGI:2443858)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14706
euxassay_005633_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14706Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14706_wholemount_strong.wlz
14706_wholemount_moderate.wlz
14706_wholemount_weak.wlz
14706_wholemount_possible.wlz
14706_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14706_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7561
Entity Detected:Pcif1, PDX1 C-terminal inhibiting factor 1 ( MGI:2443858)
Sequence:sense strand is shown

>T7561
GCAGCGGCGCTGGGGAGGGCGAGGCGGAGGCGGCAAAACGGGCGGTCGAGCAGAACGTGTGGCCGCATCC
CCTCGAGTCCGCTTCGGGCAGCTGCTGATTCACGGAGTCCCCTGGGTCCCTGTCAACTGCAGTGCTGACC
AGCCTACCCACCTGTGCTACGCCTTCCTGTGGGCCTCCCCCCTCTTCTGTGGGACCCCGTGACGTGGGTT
CAGTCCAGCCAGAGAAGAAAACTCTGATGCTAGCGTCGCAGCCCCCAGAGGGTCCCGTGTGGGTGCTGAG
ATGGCCAATGAGAATCACGGCAGCCCCCGGGAAGGAGCCTCCCTTCTAAGTCACTCTCCAGGCACCTCCA
GTCAGAGCCAGCCCTGTTCTCCAAAGCCAGTTCGCCTGGTACAGGACCTTCCAGAGGAGCTGGTACATGC
AGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAGCCGTCCCTACTACTTCAACCGATTCACCAACCAGTCT
CTGTGGGAGATGCCCGTGCTGGGTCAGCACGACGTGCTTTCGGACCCTCTGGGGCTGAATGCAACCCCAC
TGCCCCAAGACTCAAGCTTGGTGGAAACGCCCCCAGTAGAGAACAAGTCCAGAAAGCGACAGCTCTCAGA
GGAGCAGCCAAGTGGCAACGGAGTGAAGAAGCCCAAGATTGAAATCCCTGTGACACCCACAAGCCAGTCA
GTGCCCAGTTCCCCTAGCATCCCAGGAACCCCAACACTGAAGATTTGGGGTTCATCCACTGAAGATAAAC
AGGCAGCTCTCCTCCGACCCACTGAGGTGTACTGGGACCTGGACATCCAGACCAATGCTGTCATCAAGCA
CAGGGGTCCTTCAGAGGTCCTGCCTCCACACCCTGATGTTGAGTTGCTCCGCTCGCAGCTCATCTTGAAG
CTCCGCCAGCACTACCGGGAACTGTGCCAGCAGCGGGAGGGCATTGAGCCGCCCCGGGAATCTTTCAACC
GCTGGATGCTGGAGCGCAAAGTGGTGGACAAAGGATGTGATCCTCTGTTGCCAAGCAACTGTGAACCAGT
TGTGTCTCCATCCATGTTTCGTGAAATTATGAATGACATTCCCATCAGGTTATCCCGAATCAAGTTCCGG
GAGGAAGCCAAACGCCTGCTCTTTAAATACGCAGAAGCTGCCAGGCGGCTCATTGAGTCCAGGAGTGCAT
CCCCTGACAGCAGAAAAGTGGTCAAATGGAACGTGGAGGACACCTTCAGCTGGCTGCGGAAAGAGCACTC
GGCCTCCAAGGAGGATTACATGGACCGCCTGGAGCACCTTCGGAGGCAGTGTGGGCCCCATGTCTCTGCT
GCAGCCAAGGACTCTGTGGAAGGCATCTGCAGCAAGATCTACCACATCTCCCTGGAATATGTTAAACGGA
TCCGAGAAAAGCACCTTGCTGTCCTCAAGGAAAACAACATCCCAGAGGAAGTGGAGGCCTCAGAGTTGGA
GCCCCGCCTGGTGTACTGCTACCCAGTGCGTCTGGCCGTGTCCGCACCCCCCATGCCTAGTGTGGAGATG
CACGTGGAGAACAGTGTGGTCTGCATCCGCTATAAGGGGGAGATGGTCAAGGTCAGCCGCAGCTACTTCA
GCAAACTGTGGCTCCTCTACCGCTATAGCTGTGTGGATGACTCTGCCTTTGAGAGGTTCCTGCCTCGAGT
CTGGTGTCTTCTCCGCCGATATCAGATGATGTTTGGCGTGGGCCTCTATGAGGGGACTGGCCTGCAGGGG
TCACTGCCAGTGCATGTCTTTGAGACCCTCCACCGACTCTTTGGTGTCAGTTTCGAGTGCTTCGCCTCCC
CCCTCAACTGCTACTTCCGCCAGTACTGTTCTGCCTTCCCTGACACAGATGGCTACTTTGGCTCCCGAGG
GCCCTGCCTGGACTTCACCCCGCTGAGTGGTTCCTTTGAGGCCAACCCTCCGTTCTGCGAGGAGCTCATG
GATGCTATGGTCTCTCACTTCGAGAAACTGCTGGAGAGCTCAGCAGAACCCCTGTCCTTCATCGTGTTCA
TCCCGGAGTGGCGGGAGCCCCCCACACCAGCGCTCACCAGGATGGAGCAGAGCCGCTTCAAACGCCACCA
GCTGGTCTTGCCTGCCTTTGAGCACGAGTACCGCAGTGGCTCCCAGCACATCTGCAAGAAGGAGGAAATG
CACTACAAGGCCGTCCACAACACGGCAGTGCTCTTCCTGCAGAATGGCCCCGGGTTCGCCAAGTGGGGGC
CGACGCCAGAGCGGCTGCAGGAGCTCACCGCTGCCTATAAGCAGTCGGGCCGCAGCCATGGCTCCAGCTC
TTCTTCCTCCTCCTCTTCCTCCTCCTCCGAGGCCAAGGACCGGGACTCAGGCCGGGAACAGGGCCCTAGT
AGAGAGCCTCACCCCACTTAACATATCCTGCGGGGAGGAGGAGCTCCAGGGGTGCTGTCACAGACTGCTA
GGACTCAGCCTCAGGGCTCTCCCCTGGGGTGGCAGCAGGACTTGAGCTGCCAGGGACATAGGAATATTAC
GGCTCTGCCAGGGATCCCCCTCCCTGCTCTCACCCTTTCCGATTCACCAAGTCCCTTGTAAATAGGCCCG
TGCCTCCCCAGCCCCAGACCCTGTTGCTGCCTTGTTTCATTTGTAAAAGGAAATACAGAAACTCCCCAAG
AAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4241283 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4241283 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14704 same embryo
 EMAGE:14703 same embryo
 EMAGE:14705 same embryo
 EMAGE:14702 same embryo
 EurExpress:euxassay_005633 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS