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EMAGE:14841

Mfsd7a major facilitator superfamily domain containing 7A ( MGI:2442629)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14841
euxassay_005776_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14841Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14841_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14841_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35630
Entity Detected:Mfsd7a, major facilitator superfamily domain containing 7A ( MGI:2442629)
Sequence:sense strand is shown

>T35630
TGTGCCAGTGGCTATTCTAATGAGTTCTCAGGCCTCTGTGGGGCTCTCTTCATCGTGTTTGGAATTTTGG
GGGCACTGCTTCTAGGCCTGTATGTGGATCGGACCAAGCACTTCACCGAAGCCACCAAGATAGGCCTCTG
TCTGACTTCCATGACCTCTGTGGCCTTTGCTCTGGTATCCCAGCTGCAGGGACAGACCCTTGCACTGGCT
GCCATCTGCTCCCTCTTTGGGCTCTTTGGCTTCTCAGTGGCACCTGTGGTCATGGAGCTGGCTGTTGAAT
GCTCATTTCCTGTGGGTGAGGGTGCCTCTGCTGGCTTGATCTTTGTCCTGGGGCAGGCCGAGGGTATGCT
CATCATGCTGCTATTGACGGCACTGACTGTGCGGCGAACGGGTCCATCCTTTTCTACCTGCCAGCAGGGT
GAGGACCCTCTGGACTGGACAGTGTCCCTGCTGCTGCTGGCCGGCCTATGTACCCTTTTCACCTGTGTCT
TGGTGATCTTCTTCAACACCCCATACCGGCGCCTGGAGGCTGAGTCTGGCGGATCCTCTTCACCCACGAT
GTGTGCCAGGGATCCAAGGACTGTTAGTCCCACCCAAGTGCCACCACTTGAGACTCCTGGCTTGACTCCT
CCAGATGAGGCCTTGAAGGAAGCTCCTGGCCCTGCTTCTGTCTCCAAAGGACATTCAGAATGGGCAGAGA
CTATGCCCAGAGACGTCTAGTAAAGCATAGGCTTGCTAGGGTTTCTTTGATTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 67697. Forward Primer - name:067697_F_cDNA_4732482E20Rik, sequence:TGTGCCAGTGGCTATTCTAATG; Reverse Primer - name:067697_N_SP6_cDNA_4732482E20Rik, sequence:CAATCAAAGAAACCCTAGCAAGC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14840 same embryo
 EMAGE:14838 same embryo
 EMAGE:14842 same embryo
 EMAGE:14839 same embryo
 EurExpress:euxassay_005776 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS