Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:15233

Snap25 synaptosomal-associated protein 25 ( MGI:98331)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233
"Pseudo-wholemount" of euxassay_010461. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010461_01 euxassay_010461_02 euxassay_010461_03 euxassay_010461_04
EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233
euxassay_010461_05 euxassay_010461_06 euxassay_010461_07 euxassay_010461_08 euxassay_010461_09
EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233
euxassay_010461_10 euxassay_010461_11 euxassay_010461_12 euxassay_010461_13 euxassay_010461_14
EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233
euxassay_010461_15 euxassay_010461_16 euxassay_010461_17 euxassay_010461_18 euxassay_010461_19
EMAGE:15233 EMAGE:15233 EMAGE:15233 EMAGE:15233
euxassay_010461_20 euxassay_010461_21 euxassay_010461_22 euxassay_010461_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15233Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15233_wholemount_strong.wlz
15233_wholemount_moderate.wlz
15233_wholemount_weak.wlz
15233_wholemount_possible.wlz
15233_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15233_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
forebrain
strong strong
homogeneousstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
hindbrain
strong strong
homogeneousstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18
midbrain
strong strong
homogeneousstrong expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15
facial vii ganglion
strong strong
regionalstrong expression: see section 02 03 04 05 06 17 18 19
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 04 05 14 15 16
trigeminal v ganglion
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 08 16 17 18 19 20 21
vagus x ganglion
strong strong
regionalstrong expression: see section 05 14
vestibulocochlear viii ganglion
strong strong
regionalstrong expression: see section 05 06 15 16 moderate expression: see section 04
trigeminal v nerve
strong strong
regionalstrong expression: see section 09 10 16 17
spinal cord
strong strong
homogeneousstrong expression: see section 03 04 05 06 07 08 09 10
cervico-thoracic ganglion
strong strong
regionalstrong expression: see section 05 06 10 12
cervical ganglion
strong strong
regionalstrong expression: see section 05 06 13 14
thoracic ganglion
strong strong
regionalstrong expression: see section 07 08 09 10
dorsal root ganglion
strong strong
regionalstrong expression: see section 02 03 04 05 06 07 10 11 12 13
extrinsic ocular muscle
strong strong
regionalstrong expression: see section 06 07 08 20 21 22
neural retina
strong strong
regionalstrong expression: see section 02 03 04 05 23
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 13 14 15 16 17 18 weak expression: see section 11 12 19
vomeronasal organ
moderate moderate
regionalmoderate expression: see section 14
lower lip
moderate moderate
regionalmoderate expression: see section 08 09 10 11 19 20 21 22 23 weak expression: see section 07 12
upper lip
moderate moderate
regionalmoderate expression: see section 08 09 10 22 23 weak expression: see section 07 12
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30210
Entity Detected:Snap25, synaptosomal-associated protein 25 ( MGI:98331)
Sequence:sense strand is shown

>T30210
GGTAACAAACGATGCCCGGGAAAATGAAATGGATGAAAACCTAGAGCAGGTGAGCGGCATCATCGGAAAC
CTCCGTCATATGGCCCTAGACATGGGCAATGAGATTGACACCCAGAATCGCCAGATTGACAGGATCATGG
AGAAGGCTGACTCCAACAAAACCAGAATTGATGAAGCCAACCAACGTGCAACAAAGATGCTGGGAAGTGG
TTAAATCTGCCGTTCTGCTGTGCTGTCCTCCAATGTTGTTGGACAAGAGAGAAGAGAGCTCCTTCATGCT
TCTCTCATGGTATTACCTAGTAAGACTTACACACACACACACACACACACACACACACACACACACACAC
ACACACACACAGAGTAGTCACCCCCATTGTAAATGTCTGTGTGGTTTGTCAGCTTCCCAATGATACCATG
TGTCTTTTGTTTTCTCCGGCTCTCTTTCTTTGCCAAAGGTTGTACATAGTGGTCATCTGGTGACTCTATT
TCCTGACTTAAGAGTTCTTGGGTCTCTCTCTTTCTTTTCTCAGTGGCGTTTGCTGAATGACAACAATTTA
GGAATGCTCAATGTACTGTTGATTTTTCTCAATACACAGTATTGTTCTTGTAAAACTGTGACTTACCACA
GAGCTACTACCACAGTCCTTTCTTAGGGTGTCAGGCTCTGAATCTCTCCAAATGTGCTCTCTTTGGTTCC
TCAGTGCTATTCTTTGTCTTTATGATTTCATAATTAGACAATGTGAAATTACATAACAGGCATTGCACTA
AAAGTGATGTGATTTATGCATTTATGCATGAGAACTAAATAGACTTTTAGATCCTACTTAAACAAAAACT
TCCATGACAGTAGCATACTGACAAGAAAACACACACAACAGCAACAATAACAAAGCAACAACTACGCATG
CTCAGCATTGGGACACTGTCAAGATTAAGTCATACCAGCAAAACCTGCAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4504644), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 38152. Forward Primer - name:038152_F_IRAV51-54_M17_Snap25, sequence:GGTAACAAACGATGCCCG; Reverse Primer - name:038152_R_SP6_IRAV51-54_M17_Snap25, sequence:GCTGCAGGTTTTGCTGGT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15232 same embryo
 EMAGE:15235 same embryo
 EMAGE:15231 same embryo
 EMAGE:15234 same embryo
 EurExpress:euxassay_010461 same experiment
 MGI:4828342 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS