EMAGE mouse gene expression spatial database

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EMAGE:15282

Enpep glutamyl aminopeptidase ( MGI:106645)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_010473. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_010473_01	euxassay_010473_02	euxassay_010473_03	euxassay_010473_04

euxassay_010473_05	euxassay_010473_06	euxassay_010473_07	euxassay_010473_08	euxassay_010473_09

euxassay_010473_10	euxassay_010473_11	euxassay_010473_12	euxassay_010473_13	euxassay_010473_14

euxassay_010473_15	euxassay_010473_16	euxassay_010473_17	euxassay_010473_18	euxassay_010473_19

euxassay_010473_20	euxassay_010473_21	euxassay_010473_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

15282_wholemount_strong.wlz

15282_wholemount_moderate.wlz

15282_wholemount_weak.wlz

15282_wholemount_possible.wlz

15282_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:15282_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

physiological umbilical hernia

moderate

regional

moderate expression: see section 10 11

cochlea

moderate

regional

moderate expression: see section 02 03 04 18 19

rectum

moderate

regional

moderate expression: see section 10

metanephros

moderate

regional

moderate expression: see section 05 06 07 14 15 weak expression: see section 13

lung

weak

regional

weak expression: see section 04 06 07 08 09 10 11 12 13 14 15 16 17 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30533
Entity Detected:	Enpep, glutamyl aminopeptidase ( MGI:106645)
Sequence:	sense strand is shown >T30533 GCCGGATCGTCACCATAGCTGAGCCCTTCAACACTGAACTGCAGCTCTGGCAGATGCAGAGCTTTTTTGC AAAATATCCAAATGCTGGCGCTGGAGCAAAACCTAGAGAGCAAGTGCTGGAGACGGTGAAGAACAACATC GAGTGGCTAAACGTGAACAGACAGTCCATCAGAGAGTGGTTCGCTAGCCTGCCGTAGGACGGACAGTGAA AACACGTGCAAGGGTGAAGGCACGTCATCTGTGCCTCTGCTGCACCGTGGGCGGAGCCTGAGATGGCCTG TTTTACAGACCGCAGAGGGGAGCCTTTGAAACCAGTTCTGCTTTTGCTAAGTACTGTATTTATGTCACGC AAAGCTTTTAAATTATTCCTCTTTGTTTTTGCAGGAAGATACTAATAGAGTATTTAATATACTCAGGGAT TTCTGCTAAGTGTTCTTCATGGGAAAGTCTTTACAAACTGAAGGGTTTAATAGTCACATTAATGTCTTTA ATATCATTCCTTGTATCTTAGATCTGTGAAAATGGAGCAATTTGGTCCTAGCTTTACATTTTTAGTACCA AAGAAACACCACTTAATCTTCTCTCTTGATTGATTTTTAAAGTTTAAATACCAGTACTTGCAGGGTGTAT TGCCATCTTAATCTTTATTTTATTATTCAGAATTACATAGACCTAATATCATTTTATTCACAAATGTCTC ACTGCTTTAAATCCTACCAAAGTAACCTTGGCTTAAGTTTTGATCAAGGATTGAAGGAATGAGCCA
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:891227), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 60538. Forward Primer - name:060538_F_IRAV110_h04_Enpep, sequence:GCCGGATCGTCACCATAG; Reverse Primer - name:060538_R_SP6_IRAV110_h04_Enpep, sequence:TTGGCTCATTCCTTCAATCC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:15281 same embryo
	EMAGE:15284 same embryo
	EMAGE:15285 same embryo
	EMAGE:15286 same embryo
	EMAGE:15283 same embryo
	EurExpress:euxassay_010473 same experiment
	MGI:4824558 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source