EMAGE mouse gene expression spatial database

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EMAGE:15486

Kifc1 kinesin family member C1 ( MGI:109596)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_010691. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_010691_01	euxassay_010691_02	euxassay_010691_03	euxassay_010691_04

euxassay_010691_05	euxassay_010691_06	euxassay_010691_07	euxassay_010691_08	euxassay_010691_09

euxassay_010691_10	euxassay_010691_11	euxassay_010691_12	euxassay_010691_13	euxassay_010691_14

euxassay_010691_15	euxassay_010691_16	euxassay_010691_17	euxassay_010691_18	euxassay_010691_19

euxassay_010691_20	euxassay_010691_21

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

15486_wholemount_strong.wlz

15486_wholemount_moderate.wlz

15486_wholemount_weak.wlz

15486_wholemount_possible.wlz

15486_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:15486_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

hypothalamus ventricular layer

moderate

regional

moderate expression: see section 14 weak expression: see section 12 13

diencephalon lateral wall ventricular layer

moderate

regional

moderate expression: see section 14 weak expression: see section 13

olfactory cortex ventricular layer

moderate

homogeneous

moderate expression: see section 11 12 15 16

telencephalon ventricular layer

moderate

homogeneous

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21

rest of cerebellum marginal layer

moderate

regional

moderate expression: see section 20 21 weak expression: see section 04 05 06 07 08 09 10 11 12 15 16 17 18 19

midbrain ventricular layer

moderate

regional

moderate expression: see section 09 10 11 12 13 14 15 16 17

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T31225
Entity Detected:	Kifc1, kinesin family member C1 ( MGI:109596)
Sequence:	sense strand is shown >T31225 TGGCTGAGCAAGGAGACCGGCTCTATGGGTTAGAGATGGAGCGGCGGCGACTCCACAACCAGCTGCAGGA ACTGAAGGGCAATATCCGGGTGTTCTGCCGTGTGCGCCCTGTCCTCGCAGGGGAATCCACTCCATCTCCT GGCTTCCTCGTGTTTCCTCCTGGCCCTGCTGGACCCTCTGATCCCCCGACGGGCCTTAGCCTCTCACGAT CTGATGATCGGCGCTCCACCCTGACTGGGGCCCCGGCCCCCACTGTCCGCCATGATTTCTCCTTTGATCG GGTGTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGAGGAGATCGCCATGCTTGTCCAGTCAGCACTG GATGGCTACCCTGTGTGCATTTTTGCCTATGGACAGACAGGCAGTGGCAAGACCTTCACTATGGAAGGAG GGCCTAGGGGAGACCCCCAATTGGAAGGGCTGATCCCTCGGGCCATGCGGCATCTGTTCTCTGTGGCCCA GGAGATGAGCGGCCAGGGCTGGACATACAGTTTTGTGGCGAGTTACGTAGAGATCTACAATGAGACCGTT CGAGACCTGCTAGCTACTGGGCCCCGCAAGGGACAAGGGGGCGAGTGTGAGATCCGTCGGGCAAGCCCAG GGAGTGAGGAGCTTACTGTCACCAATGCCCGCTATGTCCCTGTTTCCTGTGAGAAAGAGGTGGAGGCCCT GCTCCATTTGGCTCATCAGAACCGGGCTGTGGCCCACACTGCCCAAAATAAGAGATCATCACGCAGTCAT AGTGTGTTCCAGCTGCAGATTTCTGGAGAGCATGCAGCTCGGGGCCTGCAGTGTGGCGCTCCCCTCAACC TTGTGG
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:3495308), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 10655. Forward Primer - name:010655_F_IRAV04-07_O08_Kifc5a, sequence:TGGCTGAGCAAGGAGACC; Reverse Primer - name:010655_R_SP6_IRAV04-07_O08_Kifc5a, sequence:TCCACAAGGTTGAGGGGA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:15487 same embryo
	EMAGE:15483 same embryo
	EMAGE:15485 same embryo
	EMAGE:15484 same embryo
	EMAGE:15482 same embryo
	EurExpress:euxassay_010691 same experiment
	MGI:4825774 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source