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EMAGE:15644

Trim44 tripartite motif-containing 44 ( MGI:1931835)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15644 EMAGE:15644 EMAGE:15644 EMAGE:15644 EMAGE:15644
"Pseudo-wholemount" of euxassay_010894. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010894_01 euxassay_010894_02 euxassay_010894_03 euxassay_010894_04
EMAGE:15644 EMAGE:15644 EMAGE:15644 EMAGE:15644 EMAGE:15644
euxassay_010894_05 euxassay_010894_06 euxassay_010894_07 euxassay_010894_08 euxassay_010894_09
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euxassay_010894_10 euxassay_010894_11 euxassay_010894_12 euxassay_010894_13 euxassay_010894_14
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euxassay_010894_15 euxassay_010894_16 euxassay_010894_17 euxassay_010894_18 euxassay_010894_19
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euxassay_010894_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15644Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15644_wholemount_strong.wlz
15644_wholemount_moderate.wlz
15644_wholemount_weak.wlz
15644_wholemount_possible.wlz
15644_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15644_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38879
Entity Detected:Trim44, tripartite motif-containing 44 ( MGI:1931835)
Sequence:sense strand is shown

>T38879
GAAGGAGAAACTGAGGCAGAAAGCGAATTTGACCCCGAAATAGAAATGGAAGCGGAGAGAGTGGCCAAGA
GGAAGTGTCCAGACCATGGGCTGGATTTGAGCACCTATTGTCAGGAAGATAGGCAGCTCATCTGTGTCCT
GTGTCCAGTCATTGGGGCTCACCGGGGCCACCAGCTGTCCACGCTGGACGAAGCCTTCGAAGAACTGAGA
AGCAAACACTCCGGTGGACTGAAGGCAGCAATGATAGAGTTGGTGGAAAGGTTAAAGTTCACGAGCTCAG
ACCCTAAAGTAACTCGAGACCAGATGAAGATATTTATACAGCAAGAATTTAAGAAAGTTCAGAAAGTTAT
TGCTGATGAGGAGCAGAAGGCCCTTCATTTAGTGGATATCCAAGAAGCAATGGCCACGGCTCATGTGACT
GAGATATTGGCGGACATCCAATCTCACATGGATAGGTTGATGACTCAGATGGCCCAGGCCAAGGAACAAC
TTGAT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 177621. Forward Primer - name:177621_F_cDNA_Trim44, sequence:GAAGGAGAAACTGAGGCAGAAA; Reverse Primer - name:177621_N_SP6_cDNA_Trim44, sequence:ATCAAGTTGTTCCTTGGCCTG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15648 same embryo
 EMAGE:15645 same embryo
 EMAGE:15646 same embryo
 EMAGE:15647 same embryo
 EMAGE:15649 same embryo
 EurExpress:euxassay_010894 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS