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EMAGE:15666

Fgd5 FYVE, RhoGEF and PH domain containing 5 ( MGI:2443369)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666
"Pseudo-wholemount" of euxassay_010886. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010886_01 euxassay_010886_02 euxassay_010886_03 euxassay_010886_04
EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666
euxassay_010886_05 euxassay_010886_06 euxassay_010886_07 euxassay_010886_08 euxassay_010886_09
EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666
euxassay_010886_10 euxassay_010886_11 euxassay_010886_12 euxassay_010886_13 euxassay_010886_14
EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666
euxassay_010886_15 euxassay_010886_16 euxassay_010886_17 euxassay_010886_18 euxassay_010886_19
EMAGE:15666 EMAGE:15666 EMAGE:15666 EMAGE:15666
euxassay_010886_20 euxassay_010886_21 euxassay_010886_22 euxassay_010886_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15666Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15666_wholemount_strong.wlz
15666_wholemount_moderate.wlz
15666_wholemount_weak.wlz
15666_wholemount_possible.wlz
15666_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15666_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
telencephalon mantle layer
strong strong
regionalstrong expression: see section 11 12 13 15 16 weak expression: see section 14
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38916
Entity Detected:Fgd5, FYVE, RhoGEF and PH domain containing 5 ( MGI:2443369)
Sequence:sense strand is shown

>T38916
CCTACAAGGTCTGTCCCATCTCAGCGGCTCCCAGAGAGGACCTCACATCAGACGAAGAACAAGGAAGCTC
CGAGGAGGAGGACAGTGCTTCAAGAGACCCCAGCCTCTCACACAAGGGTGAAGGACAGTCTAGAGCCCTT
GTCATCGCTCAGGAGCTGCTGTCTTCAGAGAAAGCATATGTGCAGATGTTGCAGCACTTAAGCCTGGATT
TCCATGGAGCCGTCCTGAGGGCCTTGGAGAACGTAGAGCAAGAGGGCAGAGAGCCACTGGCCCAGGAGGA
GCTGCGGCAGGGCCTGCGGGAGCTCCCAGCTATCTGTGACCTTCACCAGGGCATCCTGGAGAGCCTGGAG
CAGAGGCTGGGGGATTGTGGGGAGGGCCAGCCGCAGGTGGCCGACATCTTCCTGGCCCAGGAACAGGAGT
TCGAGCATCATGCCGCACACATCCTGCAATTTGACAGGTACCTGGGGCTGCTCGCTGAGAGCTGCCTGCT
CTCACCCCGGCTAGCCACCACGGTCCGGGAGTTTGAGCAGAGTTCACAAGGGGGTGGCCAGAGCATGAAG
CATCGTATGCTGCGTGTGGTCCAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 267932. Forward Primer - name:267932_F_cDNA_Fgd5, sequence:CCTACAAGGTCTGTCCCATCTC; Reverse Primer - name:267932_N_SP6_cDNA_Fgd5, sequence:CTGGACCACACGCAGCATAC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15665 same embryo
 EMAGE:15664 same embryo
 EMAGE:15662 same embryo
 EMAGE:15663 same embryo
 EMAGE:15667 same embryo
 EurExpress:euxassay_010886 same experiment
 MGI:4824839 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS