EMAGE mouse gene expression spatial database

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EMAGE:15678

Ak4 adenylate kinase 4 ( MGI:87979)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_010883. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_010883_01	euxassay_010883_02	euxassay_010883_03	euxassay_010883_04

euxassay_010883_05	euxassay_010883_06	euxassay_010883_07	euxassay_010883_08	euxassay_010883_09

euxassay_010883_10	euxassay_010883_11	euxassay_010883_12	euxassay_010883_13	euxassay_010883_14

euxassay_010883_15	euxassay_010883_16	euxassay_010883_17	euxassay_010883_18	euxassay_010883_19

euxassay_010883_20	euxassay_010883_21	euxassay_010883_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

15678_wholemount_strong.wlz

15678_wholemount_moderate.wlz

15678_wholemount_weak.wlz

15678_wholemount_possible.wlz

15678_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:15678_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

nasal cavity olfactory epithelium

weak

regional

weak expression: see section 11 12 15 16

stomach

weak

regional

weak expression: see section 05 06 07 08

hindgut

weak

regional

weak expression: see section 12

rectum

weak

regional

weak expression: see section 12

midgut

weak

regional

weak expression: see section 08 11 12 13 14 15 16 17

lower jaw incisor

weak

regional

weak expression: see section 11 12 15

lower jaw molar

weak

regional

weak expression: see section 07 19

upper jaw incisor

weak

regional

weak expression: see section 11 12 16

upper jaw molar

weak

regional

weak expression: see section 07 19

clavicle

weak

regional

weak expression: see section 08 09 14 15

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T38913
Entity Detected:	Ak4, adenylate kinase 4 ( MGI:87979)
Sequence:	sense strand is shown >T38913 GGGTGATTTCATGTCTATGGGTGTAAAGGTGTTTTCTGCAGCAGGCTTGGCTGATTTTGTGGAAATGGTC ATAAATACTGACCGTGTCTTGACAAAGGTGCAATGGAAGCAGCATCTTTGCCTTCTCAGGCGACACATGG CCAAGAGTCTGGGTGCTCTCTGAGGTTCTGACTTTACATTCATGGACTCCCCGTTCAGCTTGCATCCCAC AGGCCTCATGGGAAAGGCTGCATGTTTATTCCTCCAGTATTTATGACAAAAAAGGTGCTATGAAGGAGGC CCTCTGAGTAAAGTGCGCACTCTCCGGACCTTTATAAGCATTGTGGTGAATCTTCCCAGGCACAACCAAT ATTTCCTATAAACAAGAGTCCAGGATATGAAGTCTTGCCCAGGCTCTTCATATGAGTAAACACTAAAGCT ATGATTCAGTCCCAGGTTTTCCTGCTTCTGAAACCCTTGGCCTTTTACAGGATGTTATTTGTCTGTCTTG ACCTAAGCAACCTGGGGCCATGAGCCTGCTTAGGTCTGCTTGTGGCCTCAGGGAGAGTGGCTGCGTGAGG CTATTTCTTTT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 265537. Forward Primer - name:265537_F_cDNA_Ak3l1, sequence:GGGTGATTTCATGTCTATGGGT; Reverse Primer - name:265537_N_SP6_cDNA_Ak3l1, sequence:AAAAGAAATAGCCTCACGCAG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:15674 same embryo
	EMAGE:15677 same embryo
	EMAGE:15676 same embryo
	EMAGE:15675 same embryo
	EurExpress:euxassay_010883 same experiment
	MGI:4823059 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source