EMAGE mouse gene expression spatial database

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EMAGE:15723

Foxk1 forkhead box K1 ( MGI:1347488)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_010907. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_010907_01	euxassay_010907_02	euxassay_010907_03	euxassay_010907_04

euxassay_010907_05	euxassay_010907_06	euxassay_010907_07	euxassay_010907_08	euxassay_010907_09

euxassay_010907_10	euxassay_010907_11	euxassay_010907_12	euxassay_010907_13	euxassay_010907_14

euxassay_010907_15	euxassay_010907_16	euxassay_010907_17	euxassay_010907_18	euxassay_010907_19

euxassay_010907_20	euxassay_010907_21	euxassay_010907_22	euxassay_010907_23	euxassay_010907_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

15723_wholemount_strong.wlz

15723_wholemount_moderate.wlz

15723_wholemount_weak.wlz

15723_wholemount_possible.wlz

15723_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:15723_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

diencephalon lateral wall mantle layer

weak

regional

weak expression: see section 10 11 12 15 17 18

thalamus mantle layer

weak

regional

weak expression: see section 09 10 11 12 15 17 18 19

medulla oblongata floor plate

weak

regional

weak expression: see section 11

metencephalon floor plate

weak

regional

weak expression: see section 12

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T38904
Entity Detected:	Foxk1, forkhead box K1 ( MGI:1347488)
Sequence:	sense strand is shown >T38904 ACAGAGAGGTGTCTCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCACGGAGGTCTCCAGCTTCACCC ACCCACCCAGGGCTGATGTCCCCTCGTTCCAGTGGCCTGCAGACCCCAGAGTGCCTGTCTCGGGAGGGCT CCCCCATTCCACATGATCCCGACTTGGGGTCAAAGTTAGCCTCTGTTCCAGAGTACCGCTATTCCCAGAG TGCCCCAGGCTCCCCTGTCAGCGCCCAGCCGGTGATCATGGCTGTCCCTCCCCGACCTTCCAACCTAGTG GCTAAGCCTGTCGCCTACATGCCAGCTTCCATAGTGACCTCACAGCAGCCCTCAGGCCACGCCATCCATG TGGTCCAGCAGGCCCCTACCGTCACCATGGTGAGGGTGGTTACCACCTCTGCCAACTCAGCCAACGGGTA CATCCTGGCTAGCCAGGGCTCGACTGGGACCTCCCACGACACAGCAGGCACAGCCGTGTTGGACCTGGGC AATGAGGCTGCAGGTTTGGAAGAGAAGCCCACCATAGCATTTGCCACAATCCCCGCAGCCAGCCGAGTTA TCCAGACGGTCGCCAGCCAGATGGCCCCAGGGAGTCCCCGGACACACAGTCACCATCCTACAGCCGGCTA CACCAGTGACTATCGGGCAGCACCACTT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 265667. Forward Primer - name:265667_F_cDNA_Foxk1, sequence:ACAGAGAGGTGTCTCCTGCTTC; Reverse Primer - name:265667_N_SP6_cDNA_Foxk1, sequence:AAGTGGTGCTGCCCGATAGT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:15721 same embryo
	EMAGE:15720 same embryo
	EMAGE:15718 same embryo
	EMAGE:15722 same embryo
	EMAGE:15719 same embryo
	EurExpress:euxassay_010907 same experiment
	MGI:4824909 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source