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EMAGE:162

Sox9 SRY-box containing gene 9 ( MGI:98371)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:162

Expression pattern clarity: one star
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:162Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
162_wholemount_strong_3D_1.wlz
162_wholemount_moderate_3D_1.wlz
162_wholemount_weak_3D_1.wlz
162_wholemount_possible_3D_1.wlz
162_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:162_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: submitter
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:32571
Entity Detected:Sox9, SRY-box containing gene 9 ( MGI:98371)
Sequence:sense strand is shown

>MGI:32571
CGGGCGAGCACTCTGGGCAATCTCAGGGTCCGCCGACCCCACCCACCACTCCCAAAACCGACGTGCAAGC
TGGCAAAGTTGATCTGAAGCGAGAGGGGCGCCCTCTGGCAGAGGGGGGCAGACAGCCCCCCATCGACTTC
CGCGACGTGGACATCGGTGAACTGAGCAGCGACGTCATCTCCAACATTGAGACCTTCGACGTCAATGAGT
TTGACCAATACTTGCCACCCAACGGCCACCCAGGGGTTCCGGCCACCCACGGCCAGGTCACCTACACTGG
CAGTTACGGCATCAGCAGCACCGCACCCACCCCTGCGACCGCGGGCCACGTGTGGATGTCGAAGCAGCAG
GCGCCGCCCCCTCCTCCGCAGCAGCCTCCGCAGGCCCCGCAAGCCCCACAGGCGCCTCCGCAGCAGCAAG
CACCCCCGCAGCAGCCGCAGGCACCCCAGCAGCAGCAGGCACACACGCTCACCACGCTGAGCAGCGAGCC
AGGCCAGTCCCAGCGAACGCACATCAAGACGGAGCAGCTGAGCCCCA
nt 974 - nt 1510 of NM_011448.1
Notes:Probe used originally described by Wright et al, 1995 [PMID:7704017]
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Kirsten Steiner, Meredith O'Rourke, Patrick Tam
Principal investigator:Patrick Tam, Children's Medical Research Institute, Embryology Unit, CMRI, Locked Bag 23 Wentworthville, Sydney, Australia 2145
Submitted by:Kirsten Steiner, Children's Medical Research Institute, Embryology Unit, CMRI, Locked Bag 23 Wentworthville, Sydney, Australia 2145
Experiment type:non-screen
References:[ doi:10.1038/ng0195-15] [ PMID:7704017] Wright E, Hargrave MR, Christiansen J, Cooper L, Kun J, Evans T, Gangadharan U, Greenfield A, Koopman P 1995 The Sry-related gene Sox9 is expressed during chondrogenesis in mouse embryos. Nat Genet (9):15-20
Links:MGI:32571 probe details
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE