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EMAGE:16219

0610011L14Rik RIKEN cDNA 0610011L14 gene ( MGI:1915545)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16219 EMAGE:16219
euxassay_017065_01 euxassay_017065_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16219Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16219_wholemount_strong.wlz
16219_wholemount_moderate.wlz
16219_wholemount_weak.wlz
16219_wholemount_possible.wlz
16219_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16219_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7228
Entity Detected:0610011L14Rik, RIKEN cDNA 0610011L14 gene ( MGI:1915545)
Sequence:sense strand is shown

>T7228
CGGCCTCCGGTTTCCTTGTGTGTGGTCGGGCCACCTCGCTTCTTGTCTCAGAATCGCGCTGGCGGAGTCT
GGCTTTGTGAGCTGGTGTCTGAGGAGGCCTTTCTTCCTGAGAACCCGTCCCTGAGGACACCGTGGTCAGG
GTCTCTGGGGCTCCCGAAGGAACTTCCCCCCACACCCCTTTAACTGTAACCAGAGAACGAGACTCACTCG
AGCTGGATCTGCGTGGCTTCCGGAGACAGAAAAGAGCCCTGCTTTTGGTTACCCTCCACTGGCTTCATGT
CTTCCATGCAGATGGATCCAGAGTTAGCCAAGCAGCTCTTCTTTGAAGGAGCCACGGTGGTCATTCTGAA
CATGCCCAAGGGGACAGAGTTTGGCATTGACTACAACTCTTGGGAGGTGGGGCCCAAGTTCCGGGGTGTG
AAGATGATTCCCCCTGGCATCCACTTCCTGTACTACAGCTCTGTGGACAAGGCCAATCCCAGGGAGGTGG
GCCCTCGCATGGGCTTCTTCCTCAGCCTGAAGCAGCGGGGGCTGACAGTCCTGCGCTGGAATGCAGTCCA
GGAAGAAGTAGACCTGTCTCCAGCTCCAGAGGCTGAAGTAGAAGCTATGAGAGCCAATCTCCCAGACCTA
GACCAGTTTCTGGGACCTTACCCATATGCTACACTCAAGAAATGGATCTCACTCACCAACTTCATCAGTG
AGGCCACCATGGAGAAGCTGCAGCCTGAGAGCAGGCAGATCTGCGCCTTCTCAGATGTGCTGCCTGTGCT
TTCCATGAAGCACACCAAGGACAGGGTGGGGCAGAATCTGCCCCTCTGCGGCACCGAGTGCAGAAGCTAC
CAAGAGGGCCTAGCCCGGCTGCCCGAGATGAGGCCCAGGGCTGGGACAGAGATCCGCTTCTCAGAGTTGC
CCACTCAGATGTTCCCAGCAGGAGCCACACCAGCAGAGATCACCAGGCACAGCATGGACTTGAGCTATGC
CCTCGAAACTGTGCTCAGCAAGCAGTTCCCTGGCAACCCCCAGGATGTGCTTGGTGAGCTCCAGTTTGCC
TTTGTGTGCTTCTTGCTGGGCAATGTGTATGAGGCATTTGAGCACTGGAAGCGGCTCCTGAACCTCCTGT
GTCGGTCTGAATCTGCCATGGGGAAGTACCACGCCCTGTACATCAGCCTCATCTCCATCCTGTACCACCA
GCTTGGTGAGATCCCTGCTGACTTCTTTGTGGACATTGTCTCCCAGGACAACTTCCTCACCAGTACCTTA
CAGGTTTTCTTTTCTTCTGCCTGCAGTATTGCTGTGGAAGCCACCCTGAGGAAGAAAGCTGAGAAGTTCC
AAGCCCACCTGACTAAGAAGTTCCGCTGGGACTTCACTTCAGAGCCAGAGGACTGTGCCCCAGTGGTGGT
GGAGCTCCCCGAGGGCATCGAGACGGCCTAACTGCAAATCCTCAAGCTGTGGGAGACCTCTTCCCTCATC
ACTACAACCCAGCGTCTCCCCCATTCATTGTCCTGGAACCCTGCAGCACAGTGATCCAGTCAGGTCCCGC
AAGGACGGAGCTGGAGCCTGTGCTCACCATAATACGTTCCTTTGCTGCAAACGTGGCCATTTATGTATGG
CTTCCTATAGACTGGCCCGGCCGCTGAATTTCAGGAAAAAAAGAGGTCGAGATGAAACCTGCCCCAGCAA
CAGTCTAATTCCTTCTGACAATGAGAAATGAACATTAGATCCAAAAGAACTAGCTGCTTATTCCATTGCT
GCTTAAAAGAAGAAAGAAACCAGATCCATCCTAGGGTCTGTGGCATTAAGTCAGTGAGTTTTTAAGTTAA
GTGTGGGTTGGTAGCTGAATGTGGTTTGTATAGAGTTTCTGCCTGCTCCTGGTTGGATGGAAGGAAACCT
GCCAGAACTCAGGCCACTGACCTCTCAGGAGCCTAGCTGGGAACAGGTGACAAGGAAGATGGTGGGTTGA
GTCTAGCAGGTGGCCAGCTTCATCTGCCACACCTCCTTCTGCCAAAAGCCACAGTGGTTAATACCTGAGT
CGGCCGCTGACTGTGGGGTCTCCTGCTACTGTCACCGTCATCCTGAGGCCTCACTCTGCAGCAGGATGTA
GAAACCTCCCACGGGTTCCCATTTCTCACAAAGGCTCCCATGATGCTTCTGATGACATGGAAATCAACAG
CAAAAGGAGGGGTCTTGCTCTGAGCCTGCTTCTTAAGCCCTGGTAAAGCCTGGGCCTTTCTTCAGAACCA
TAGAGATAGCTGGGTAGCTTAACTCTCCCCAGCACTGCTGTGGGATTCTCATGAGTGCTGTCATGTTTCT
GGTGTTAGGGAGTCTTGAAGGCACACCCATTGTGCGGTGTGGGCAGAGTTCTGCCTCAAGAAGGGCTCCC
AGGCCCTCCATTCTGACCTCAGGCTCTCTGCTGTACTCTGGAGTCCTTCTGAGGCTTGAGCTCACAGCAG
GCCAGTGAGTGAGAGTCCTGCTGTTTAAGACTTTTGGTTCCTCTTGTTTCCTTGGAGATGTTTTTCCAAG
AGCACAATGTACATTAAAGTCTTTGAGTTGGGACTAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4160578 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4160578 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16217 same embryo
 EMAGE:16216 same embryo
 EMAGE:16220 same embryo
 EMAGE:16218 same embryo
 EMAGE:16215 same embryo
 EurExpress:euxassay_017065 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS