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EMAGE:16440

1700016K19Rik RIKEN cDNA 1700016K19 gene ( MGI:1921480)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440
"Pseudo-wholemount" of euxassay_017206. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017206_01 euxassay_017206_02 euxassay_017206_03 euxassay_017206_04
EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440
euxassay_017206_05 euxassay_017206_06 euxassay_017206_07 euxassay_017206_08 euxassay_017206_09
EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440
euxassay_017206_10 euxassay_017206_11 euxassay_017206_12 euxassay_017206_13 euxassay_017206_14
EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440
euxassay_017206_15 euxassay_017206_16 euxassay_017206_17 euxassay_017206_18 euxassay_017206_19
EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440 EMAGE:16440
euxassay_017206_20 euxassay_017206_21 euxassay_017206_22 euxassay_017206_23 euxassay_017206_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16440Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16440_wholemount_strong.wlz
16440_wholemount_moderate.wlz
16440_wholemount_weak.wlz
16440_wholemount_possible.wlz
16440_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16440_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9856
Entity Detected:1700016K19Rik, RIKEN cDNA 1700016K19 gene ( MGI:1921480)
Sequence:sense strand is shown

>T9856
GTGGTCTGAGCAAGCAGTGAGCGCCTGGAGCCCGCCAGGTGCGGGTCCTCTGCTGTTTCCGGGCACGCAG
GTCGGGGACCCGCGGGCGGATGGCCGGCCGTGGTGGGACCGGTGCGGCGGAGTATGGTGAGGAGGGCGAG
GAAGAGGAGGAGGAGGAGGCGCGGGAAGGCGGAGCTGAGGGCTCCCCGGGGTCCAAGCTGCCTCCCATCG
TGGGCACCGCCTCCGAGCTGGCCAAACGGAAGGTGAAGAAGAAAAAGAAGAAGAAAAAGACTAAAGGATC
GGGCAAGGGCGACGCAGATAAACATCACAGTCGAGGGCGGAAGAATCAGCCGCTTTCTTCATCTTTCCAT
GACATCTTAAATCCCCACAAAGACCATGGCTTGAGAGCAGAGCCCAGAGACAAAGAGGAAAATAGGCAAA
CCCTTCCCTATTCGTACAGCATTAATCACCCCTGCTTTGCCGAAATAGAAGACACCCTTTCCAGCCAGAT
CAACGAGAGTCTGCGTTGGGATGGGATTCTCACCGACCCTGAGGCAGAAAAGGAAAGGATCCGCATCTAC
AAGCTCAACCGAAGGAAGCGGTACCGCCTCATGGCCCTCAAGTGCTTCCATTCCGACCCCTGCGTGGAGG
AGAGCGTGGAGAATCTGCCCTACCTCTCAGACAAAGACTGCAGCCCCTGCAGCAAGCAGCCCAGCTCTAA
GGGCGACCACGCGCATAGCTACTTTGAGGCCTCGAAGCTCCTGCACCCAGAATTAGCCACCACTGTGGCA
GAGTGACATCTGTCCTTCCTGCTGCCAATTTCCTCCTTGCCACACATTTATGTTTAAAAAGAATCATAAT
AAAAAGAAATCAGACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
Notes:The probe template was PCR amplified from IMAGE:6773542 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6773542 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16442 same embryo
 EMAGE:16444 same embryo
 EMAGE:16441 same embryo
 EMAGE:16443 same embryo
 EurExpress:euxassay_017206 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS