Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:16443

Penk preproenkephalin ( MGI:104629)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443
"Pseudo-wholemount" of euxassay_017205. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017205_01 euxassay_017205_02 euxassay_017205_03 euxassay_017205_04
EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443
euxassay_017205_05 euxassay_017205_06 euxassay_017205_07 euxassay_017205_08 euxassay_017205_09
EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443
euxassay_017205_10 euxassay_017205_11 euxassay_017205_12 euxassay_017205_13 euxassay_017205_14
EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443
euxassay_017205_15 euxassay_017205_16 euxassay_017205_17 euxassay_017205_18 euxassay_017205_19
EMAGE:16443 EMAGE:16443 EMAGE:16443 EMAGE:16443
euxassay_017205_20 euxassay_017205_21 euxassay_017205_22 euxassay_017205_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16443Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16443_wholemount_strong.wlz
16443_wholemount_moderate.wlz
16443_wholemount_weak.wlz
16443_wholemount_possible.wlz
16443_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16443_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9882
Entity Detected:Penk, preproenkephalin ( MGI:104629)
Sequence:sense strand is shown

>T9882
AGGGAAGACAGGGCGCCCTCGGAAGGACAGGATGTCATCAGGAAAACAGGACTCCCCGTGGGAAGATAGG
ATACCTCCAGGAAGATAGAATAGTCCCAGGCATCACTAGAACAGCAGGAAACACTAGGGTCCAAGCTCTC
ATTGAGGCACCCGGGGAGGTTGTTGGGTTGTGGGCGGGGCTCAGGAAAGACTGTCCCTGCTGGTCCTGAT
CCACGACCACCCACCCGGCAAGGTTCTCTCTAAGAGAACCTTGTCAGAGACAGAACGGGTCCCTACAGGC
GCGTTCTTCTCTCCTACAGCCCATGGCGCGGTTCCTGAGGCTTTGCACCTGGCTGCTGGCGCTTGGGTCC
TGCCTCCTGGCTACAGTGCAGGCGGAATGCAGCCAGGACTGCGCTAAATGCAGCTACCGCCTGGTTCGCC
CAGGCGACATCAATTTCCTGGCGTGCACACTGGAATGTGAAGGACAGCTGCCTTCTTTCAAAATCTGGGA
GACCTGCAAGGATCTCCTGCAGGTGTCCAGGCCCGAGTTCCCTTGGGATAACATCGACATGTACAAAGAC
AGCAGCAAACAGGATGAGAGCCACTTGCTAGCCAAGAAGTACGGAGGCTTCATGAAACGGTACGGAGGCT
TCATGAAGAAGATGGACGAGCTATATCCCATGGAGCCAGAAGAAGAAGCGAACGGAGGAGAGATCCTTGC
CAAGAGGTATGGCGGCTTCATGAAGAAGGATGCAGATGAGGGAGACACCTTGGCCAACTCCTCCGATCTG
CTGAAAGAGCTACTGGGAACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATG
ACGAAGACATGAGCAAGAGGTATGGGGGCTTCATGAGAAGCCTCAAAAGAAGCCCCCAACTGGAAGATGA
AGCAAAAGAGCTGCAGAAGCGCTACGGGGGCTTCATGAGAAGGGTGGGACGCCCCGAGTGGTGGATGGAC
TACCAGAAGAGGTATGGGGGCTTCCTGAAGCGCTTTGCTGAGTCTCTGCCCTCCGATGAAGAAGGCGAAA
ATTACTCGAAAGAAGTTCCTGAGATAGAGAAAAGATACGGGGGCTTTATGCGGTTCTGAAGCCCTTTTCC
AGCAGTGACCCCGACCCCCACTAGCCTGCTCCATCCCCCATGAGCAACTGCCTTGTCAATGATGTTTCTT
GTCACATGCTGCTTTGTGCTGTACAGTTGCCCCCGTGGTCTAGATAACTACACTGCCTGAAAGCTGTGAT
TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCTATGTTGTTATCAATAG
TTTGTTACCTCATCTCTCCTGACGAAACATCAATAAATGCTTATTTGTATATAAATATAATAAACCCGTG
ACCCCAACTGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6774387 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6774387 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16442 same embryo
 EMAGE:16444 same embryo
 EMAGE:16441 same embryo
 EMAGE:16440 same embryo
 EurExpress:euxassay_017205 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS