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EMAGE:16628

Scaf1 SR-related CTD-associated factor 1 ( MGI:2141980)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628
"Pseudo-wholemount" of euxassay_016817. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016817_01 euxassay_016817_02 euxassay_016817_03 euxassay_016817_04
EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628
euxassay_016817_05 euxassay_016817_06 euxassay_016817_07 euxassay_016817_08 euxassay_016817_09
EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628
euxassay_016817_10 euxassay_016817_11 euxassay_016817_12 euxassay_016817_13 euxassay_016817_14
EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628 EMAGE:16628
euxassay_016817_15 euxassay_016817_16 euxassay_016817_17 euxassay_016817_18 euxassay_016817_19
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euxassay_016817_20 euxassay_016817_21 euxassay_016817_22 euxassay_016817_23 euxassay_016817_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16628Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16628_wholemount_strong.wlz
16628_wholemount_moderate.wlz
16628_wholemount_weak.wlz
16628_wholemount_possible.wlz
16628_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16628_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T63343
Entity Detected:Scaf1, SR-related CTD-associated factor 1 ( MGI:2141980)
Sequence:sense strand is shown

>T63343
GGATAGGTCATCCAAGAAGACGCGGCCACCTAAGGACTCGACGCCTGGCTCCGGGCCACTGCCCAAAGCC
CCCCCAAGCAGTGGCTCCTCGTCCTCCTCGTCCTCCTGCTCCTCTCGCAAGGTAAAACTGCAGTCCAAGG
TGGCTGTGCTCATCCGAGAGGGCGTCAGCAGCACCACCCCTGCCAAGGATTCCTCGTCTTCAGGCCTGGG
CTCCATTGGGGTCAAGTTCAGCCGTGACCGTGAGAGCCGCTCACCATTCCTCAAGCCGGATGAGCGGGCT
CCTGCAGAGGTGGCCAAGGTGGCCCCGGGTAGCAACAAGCCCAAAAAGACCAAGGCCAAGGCCAAGGCTG
GGGCCAAGAAAGCCAAGGGGACCAAGGGAAAGACGAAGCCTTCGAAGACGAGGAAGAAGGTTCGCAGCGG
AGGCAGTAGCACGGCCAGCGGTGGGCCTGGCTCACTGAAGAAGTCCAAGGCCGACAGCTGCAGTCAGGCA
GCAAGTGCCAAGGGGACAGAGGAAACATCATGGTCAGGGGAGGAGCGGACCACCAAGGCCCCCAGTACCC
CACCACCTAAGGTGGCCCCACCTCCACCCGCACTCACCCCGGACTCCCAGACTGTGGATAGCAGCTGCAA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 267117. Forward Primer - name:267117_F_cDNA_AI480556, sequence:GGATAGGTCATCCAAGAAGACG; Reverse Primer - name:267117_N_SP6_cDNA_AI480556, sequence:TTGCAGCTGCTATCCACAGTC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16630 same embryo
 EMAGE:16627 same embryo
 EMAGE:16629 same embryo
 EurExpress:euxassay_016817 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS