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EMAGE:16648

Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain1 ( MGI:1342335)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648
"Pseudo-wholemount" of euxassay_016848. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016848_01 euxassay_016848_02 euxassay_016848_03 euxassay_016848_04
EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648
euxassay_016848_05 euxassay_016848_06 euxassay_016848_07 euxassay_016848_08 euxassay_016848_09
EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648
euxassay_016848_10 euxassay_016848_11 euxassay_016848_12 euxassay_016848_13 euxassay_016848_14
EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648 EMAGE:16648
euxassay_016848_15 euxassay_016848_16 euxassay_016848_17 euxassay_016848_18 euxassay_016848_19
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euxassay_016848_20 euxassay_016848_21 euxassay_016848_22 euxassay_016848_23 euxassay_016848_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16648Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16648_wholemount_strong.wlz
16648_wholemount_moderate.wlz
16648_wholemount_weak.wlz
16648_wholemount_possible.wlz
16648_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16648_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T63583
Entity Detected:Asap1, ArfGAP with SH3 domain, ankyrin repeat and PH domain1 ( MGI:1342335)
Sequence:sense strand is shown

>T63583
GTATTAGGGTAACCTCGGGACCTGGTGCGCCTTACCGGTTTGCCAAAGCCATCCTTGGCATCTAGCACTT
ACATCTCTCTGTGCTGTTTTATGAGCAAACAAAAGCCAGGAGTATAGGAACTGCTGGCTTTCCAGGTGAG
GAGTCTCCAGCAGCCGTCGAAGGGTGCAGTACCGACTCCTAACAATGCAGTATTCTCAGTGGCGTTACTG
AACGTGCGGCATGAGCAGAGGTGGGTTCTGCGCTCCCGGTGGAACGTAAAGTTAGTCCCTGGCCAGCCAG
CCTGTAGTTATCTGTGTACACAGTTTACAGCTACAAAAACCTACTTTGGTATTTATTACAGAGAAGTGTT
CAGTTACTCGTGTTATTCCTTCAGCAAATACTCACTGACACAAAACCCTCTGCAGCATTTTCCAGCATAT
GCAGCCTCGTGCAAGTTTAGATGAGTGGGTTTGTACATCTTATGGCGAGTGGCCACCCCTGAGATATTAC
CTCATTATGCAGAAGTAACATATCCTTCATGACTATTTTGACAAAAGCTTAAAACCATGTCTGATGAAGT
CCAACTTTCAGG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from genomic DNA prepared from tail-tips of two wild-type C57BL/6J mice), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 168458. Forward Primer - name:168458_F_Ddef1, sequence:GTATTAGGGTAACCTCGGGACC; Reverse Primer - name:168458_R_SP6_Ddef1, sequence:CCTGAAAGTTGGACTTCATCA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16643 same embryo
 EMAGE:16646 same embryo
 EMAGE:16645 same embryo
 EMAGE:16644 same embryo
 EMAGE:16647 same embryo
 EurExpress:euxassay_016848 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS