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EMAGE:16930

Itih3 inter-alpha trypsin inhibitor, heavy chain 3 ( MGI:96620)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16930
euxassay_008751_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16930Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16930_wholemount_strong.wlz
16930_wholemount_moderate.wlz
16930_wholemount_weak.wlz
16930_wholemount_possible.wlz
16930_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16930_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1269
Entity Detected:Itih3, inter-alpha trypsin inhibitor, heavy chain 3 ( MGI:96620)
Sequence:sense strand is shown

>T1269
TCCTCGAGNCTGTTGGCCTACTGGGCTCAGCAATGAGGACTATGTGGTGGCCCTGCCTTGTCTTGGCTCT
GCTCTCTGGCTTGGAGACCTCTGGCTTTCCGAGAAGTCCCCTCCAGCTGCTTGGGAAACGGAGCCTCCCA
GAGGGGGTGGTGGATGGCATTGAGGTTCACAGCACCAAGATCAGCTGCAAGGTGACCTCCCGCTTTGCTC
ACAATGTTGTCACCACAAGGGCTGTCAACCGTGCAGACACAGCCAAGGAGGTGTCCTTTGATGTGGAACT
GCCCAAGACAGCCTTCATCACCAACTTCACCTTGACCATTGATGGTGTCACCTACCCCGGGAACGTCAAG
GAGAAGGAAGTTGCCCAGAAACAATATGAAAAGGCTGTGTCCCAGGGCAAGACAGCCGGTTTGGTCAAGG
CCTCTGGGAGGAAACTGGAGAAATTCACAGTGTCTGTCAACGTGGCTGCAGGCAGCAAAGTCACCTTTGA
GCTAACCTATGAAGAACTGCTCAAGAGAAACAAAGGCAAGTACGAGATGTACCTTAAGGTCCAGCCCAAA
CAACTGGTCAGACACTTCGAGAT
Notes:The probe template was PCR amplified from IMAGE:2225651 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2225651 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16934 same embryo
 EMAGE:16931 same embryo
 EMAGE:16933 same embryo
 EMAGE:16932 same embryo
 EurExpress:euxassay_008751 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS