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EMAGE:16974

Ell3 elongation factor RNA polymerase II-like 3 ( MGI:2673679)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16974 EMAGE:16974 EMAGE:16974 EMAGE:16974 EMAGE:16974
"Pseudo-wholemount" of euxassay_007230. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007230_01 euxassay_007230_02 euxassay_007230_03 euxassay_007230_04
EMAGE:16974 EMAGE:16974 EMAGE:16974 EMAGE:16974 EMAGE:16974
euxassay_007230_05 euxassay_007230_06 euxassay_007230_07 euxassay_007230_08 euxassay_007230_09
EMAGE:16974 EMAGE:16974
euxassay_007230_10 euxassay_007230_11

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16974Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16974_wholemount_strong.wlz
16974_wholemount_moderate.wlz
16974_wholemount_weak.wlz
16974_wholemount_possible.wlz
16974_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16974_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T3960
Entity Detected:Ell3, elongation factor RNA polymerase II-like 3 ( MGI:2673679)
Sequence:sense strand is shown

>T3960
GCCAGCCTAGGCTTGCACAGCAGAGGTGGCCCTCACCTGTGGTCCCGGTTCTGCATGTGCGCGACTTTGG
CACCATGGAGGGGACCCAGGAAGCTCTGAGTGGGAAAATGCGGCTCCTCTTCACCCCCGCTGCTCGGACC
AGCCTCCTGATGCTAAGGCTCAACGAGGCGGCGCTGCGGGCATTGCAAGAGTGTCAGCAGCAACAGGTAC
GGCCAGTGATCGCTTTCCAAGGCCACCGAGGGTACCTAAGGTTTCCAGGCCCGGGATGGTCCTGCCTTTT
CTCCTTCATAGTATCCCAGTGTGGCCAAGAGGGCACTAATGGTGGCTTGGACCTTGTGTACCAACGCTTA
GGCAGATCTGGGCCGAACTGTCTCCACTGCCTGGGCTCCCTTAGAGAGCGACTCACTATTTGGGCAGCCA
TGGATACTATCCCAGCTCCACTGTTAGCTCAGGAACACCTGACTGAAGGTACCAGAGAGTCTGAGAGCTG
GCAGGACACTGGAGACGAACCTGAAGGCCATCCCCAGCTGGCACCAGATGAGGTGTCTGACCCACTGGCA
AGCCACCATGAACAGTCACTCCCAGGATCCTCCAGTGAGCCCATGGCACAATGGGAAATGAGGAACCACA
CTTATCTTCCAAGCAGAGAGCCTGATCAGTCCCTGCTTTCCCCTGCTAGCCAGAAACGCCTGGACAAGAA
ACGTTCAGCACCTATAACCACTGAAGAACCAGAGGAAAAGAGGCTCAGAGCTCTGCCTCTAGCCTCAAGT
CCACTACAAGGGCTAGCAAATCAGGACTCACAAGAGGGAGAAGACTGGGGCCAAGATGAAGATGAAGAGG
GAGATGAAGATGGAGATTCCAGGCTTGAGCAGAGCCTCTCAGCTCCATCAGCCTCTGAATCCCCAAGCCC
TGAGGAGGTACCAGATTATCTCCTGCAATACAGAGCCATCCACAGCACAGAGCAGCAACAGGCCTATGAG
CAGGACTTTGAGACCGACTATGCTGAGTACCGCATTCTGCATGCTCGAGTTGGGGCTGCAAGCCAGAGGT
TCACAGAGCTGGGGGCAGAGATCAAGAGACTTCAGCGAGGAACTCCAGAACACAAGGTGCTGGAAGACAA
GATAGTCCAGGAGTATAAAAAGTTCAGAAAGCGGTATCCAAGTTACAGGGAGGAGAAGCATCGCTGTGAG
TACCTGCATCAGAAACTGTCCCACATTAAAGGTCTCATCCTGGAATTTGAGGAGAAGAACAGGGGCAGCT
GAGACTGTCCAGAGGGCTCGGATCTTCCCCGGTGATGAACACAACAGCTGCTTTTCTGATTTTGTCCCTT
ACATCCACAGTGACCAAGTAGAGAGCCATCCTAGGTTCTTGCAGTTTGATTTTTGATGTTGCCATAATTT
TTTTTAGGGTGTGGGCATGGTATCATCTCCTCAGCTGTGCCAGGAGACTAGGAAAGTAGGAGGTGCTTGG
CTTCTTCAACTTTACTTTAGCTAAGTCATTTCTAGATCCTGAAAAGTGACATTTCCAGGTTAACCTTGAG
AATATTAGACAAATAAGCAACTTGAGGGGAGTTGCCTTGCAGGGATAAAATGAGAACTTCTGATGACAGA
ACTCATTGAACTTATAGTGTACCTTTATGTAACATGGCTGAAAAATTAAAACTGATTGCTTCTGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6313358 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6313358 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:MGI:4824525 same experiment
 EurExpress:euxassay_007230 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS