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EMAGE:17091

Ifi202b interferon activated gene 202B ( MGI:1347083)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17091
euxassay_001479_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17091Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17091_wholemount_strong.wlz
17091_wholemount_moderate.wlz
17091_wholemount_weak.wlz
17091_wholemount_possible.wlz
17091_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17091_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
thymus primordium
moderate moderate
regionalmoderate expression: see section 01
epidermis
moderate moderate
regionalmoderate expression: see section 01
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4459
Entity Detected:Ifi202b, interferon activated gene 202B ( MGI:1347083)
Sequence:sense strand is shown

>T4459
CTTATCTGCCTACCTACTCAAGCCAAGCAGGCCACTTCTTGACCCGGTGAAGGTCTCAGGATCTGTACAT
CACTGCAGAAATATCCAGGAAGCTGACACACTCTGCCTTGTTGGAGATCTAGGACCCGGAACAGGAGTCA
CTGAAGAAGTTCCCGGCTTGCAGAACTCAATCAAAAAGTCTGTATCTACAGAAAGAGACATCTGTCCCAG
GCAATGTCCAACCGTAACTTAAGGTCATCTACCAACTCAGATCTTGCTGAGGGTCAACATCAGACCCCTT
CCAGTGATTCATCTGGCCATGGGGAGGATCAACCTCAAGCCTCTCCTGGACCTAACAAAAAGTCACACAC
CCCAAAAAAGAACATTAGCAAAGGTGCTGTTCTTCATGAGAAACCCATGACAGTGATGGTACTCACTGCA
ACAGAACCATTTAATTATAAAGAGGGAAAAGAGAACATGTTTCATGCTACAGTGGCTACAGAGAGCCAAT
ATTACCGTGTGAAAGTTTTCAACATGGACTTGAAAGAGAAGTTCACAGAAAATAAATTTATTACCATTTC
CAAATACTTCAACAGCAGTGGCATCCTAGAGATCAATGAAACTGCCACTGTGTCAGAGGCTGCTCCTAAC
CAAATGTTTGAAGTGCCCAAAAATATTATCAGAAGTGCAAAAGAAACTCTTAAGATCTCTAAAATTAAAG
AACTTGATTCTGGAACACTGATTTATGGTGTGTTTGCAGTAGAGAAGAAAAAAGTGAATGATAAAAGTAT
AACCTTCAAAATAAAAGATAATGAAGATAATATAAAAGTGGTGTGGGATAAAGAACAGCACAATATCAAC
TATGAGAAAGGAGATAAACTCCAACTCTTCTCCTTTCACCTGAGAAAAGGAAATGGGAAACCAATATTAC
ACTCTGGAAATCACAGTTTCATCAAGGGAGAAAAGCTACTAAAAGAATCTTTTGAAGGGGATGGTTACCA
CAAAGGTCCCAAACAAGTGGTGGCATTGAAAGCAACAAAACTATTTACTTATGATAGTATAAAAAGTAAA
AAGATGTTCCATGCCACAGTGGCTACTGATACAGAATTCTTCAGAGTGATGGTGTTCGAGGAAAACCTAG
AGAAAAAGTTTATCCCGGGAAACACCATTGCTTTATCAGATTATTTTGGTATGTATGGGTCTCTGGCAAT
ACATGAATATTCCAGCGTGTCTGAGGTGAAGAGCCAAAATAAGGAAGACTCAAGTTCATCAGATGAAAGA
CCCATAGAACATCTTAAAATTTGTGATCTTCACTTGCAAACAAAAGAAAGGCTGGTTGATGGAGAGTTTA
AAGTATACAGGAAAAGTTCCGGAAATAATTGTATATGCTATGGAATTTGGGATGATACAGGAGCAATGAA
AGTGGTGGTATCTGGACAACTGACCAGTGTCAACTGTGAGATTGGTAATACAATTAGACTTGTCTGCTTT
GAATTGACCTCAAATGCAGATGAGTGGTTTCTGAGAGCTACGAGGTACAGTTACATGGAGGTCATCATGC
CTGAAAAATGAAAAACAGTGAGTGATGTAACCCCAATTCAATGGTGGAAATTTCCTTATGAAACATGTAC
ACTGAAAATGGAAAAGAAATGTATACCTGCTCAAATATAATACATACAACATCCAGCTCTTAGTTGTGGG
AACAATACTTTAGCTTATTCTTTATAAAAATTTTATGAACTTTCATAGTCTGCATGCTTAAGTTTCATAA
TATGAAATAAATAAATGCTGTACATTAAGCAATAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4945964 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4945964 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17090 same embryo
 EMAGE:17089 same embryo
 EurExpress:euxassay_001479 same experiment
 MGI:4825509 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS