EMAGE mouse gene expression spatial database

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EMAGE:17166

2310011J03Rik RIKEN cDNA 2310011J03 gene ( MGI:1913624)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_001569_01	euxassay_001569_02	euxassay_001569_03	euxassay_001569_04	euxassay_001569_05

euxassay_001569_06	euxassay_001569_07	euxassay_001569_08	euxassay_001569_09	euxassay_001569_10

euxassay_001569_11	euxassay_001569_12	euxassay_001569_13	euxassay_001569_14	euxassay_001569_15

euxassay_001569_16	euxassay_001569_17	euxassay_001569_18	euxassay_001569_19	euxassay_001569_20

euxassay_001569_21

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17166_wholemount_strong.wlz

17166_wholemount_moderate.wlz

17166_wholemount_weak.wlz

17166_wholemount_possible.wlz

17166_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17166_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4759
Entity Detected:	2310011J03Rik, RIKEN cDNA 2310011J03 gene ( MGI:1913624)
Sequence:	sense strand is shown >T4759 GTTCTTGGAACGAAGATAGGCAGCGGGGTGTTCCAAGAGCAAACTGGCGCGGAGATCGAGCCAAACTCCG AGGTTCCGGGAGGAGGGAAAGCGAGACGGGGTAGGGACCTCGGCGCAGGTCTGTAAGGGGTGCGTAGGAG TTCGCGAGGTGGGCGGGCCGAGCCGAAAGTGGACCCCCAGTTAGCGCGCGCTCCACCTACAAGATGAACT CCAAGGCGAAGAAACGCGTGGTACTGCCCACTCGCCCCGCGCCTCCCACGGTGGAGCAGATCCTGGAGGA CGTGCGAGGGGCACCCGCTCAAGATCCTGTTTTCACTGCCCTGGCCCCGGAAGACCCCCCAGACCCATCC CCAAGGGCTGAGGACTCTGAGATCCAGCAGGAGCAGATCTACCAACAGAGCCGGGCCTACGTGGCTATGA ATGAGAGGCTGCGGCAGGCGGGGGAAGCTCTGAGACAGAAGTTCGATGGCCTTCGGCAAGCTGGTCAGCG GCTGGAACAGGATATCAGCCAGGTGACTTCAGCCACCTCCTAGAGCCGAAGTTACACCTGATGTCCTTGG TCCAGGCCTGGGCACCTAGCAACCAGAGGCTCTGGGTCAACATTTGCTGTCCCAACCCTGGCCCGGGGAG ACCCAGTGGCCCACCTTGCCAGCTAGCAGCTTTGTTCCCTCTTCCATCCTTAATGGCCTCTAATTCATGA TGGGACTTAGGGACATGGCCACCTCCTCATTATGGGGACACTGGCCTAAATTGCATCAAGGACTTGATTG CAGGTCGGGGCTCAAAGCCAGTCTGCCCCATAGTGACCGGTGTGCTCTTCTGTCCCATGTCACCCTGGGC AGTGAAGGTCTTCATCCCCAGCATCCACAGCAGGCCAGCCACTGGCATCTTGGTTGAGAGAATGGGCTAG CTGCACGCTTCATAGAGCCTGGCTCAGGCCCTCTAGGGCTACACTGCCTTCTCAGTTCTCCCTGGGGCCG GGGAGACTCATCAAGGGAGTTTCCATTCTGGGGAGCCCAGGGGTCCAAGAGGAACTCAAAGGCCAGGTCC CTGTGTGTGGTGAATGTTGCCCCTTCTGGATCTGGGGTTTAGTTTGCCTTCTTGCAGAAGACCCACCACT CTTGGGGTGGCTGGACTTTAGTTCTGGAAGATTAAAGATGTTTGATGCCTGAACACAGTTCTCCCTTAAG CCAGGCTAGATCACTGGGTACCCAAGCCCCCTGCCACCCCTTGGCAGCTCAGGCGCTAGCTACCACACCT GCCTCCTTGGGTCCCAAGCTGGCTGGAACTGTTTTGTCAGAAGTGGCCTTAGCTTGTGGCTACATCATTC CTGACACTCCACATTCCTGGCGGTCACGGGGTCCAACTTGCCCTGACCAGTGCAGCTTGGACTCCTGGTC CCCACCTCCACCATGACACCTCCACCACAAATGACCAGTGGCTGATGGCCAGGTACAGCTTGGCTGAACC TCAGTCAACCTCGGCTCCAGCATGTGGGGATGTGACACGCTGTCGAGTCAGTGGGGAGCTCAGAAACACC TTCTGGGGTTGAACAGAGCTGTAGAAGAAGGTCTTGGAACGACCCCCCCCCCCCAGAGCCAGTGATAAAG ATGAAGCTACAGATCGAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5042442 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5042442 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17165 same embryo
	EMAGE:17167 same embryo
	EMAGE:17164 same embryo
	EMAGE:17168 same embryo
	EurExpress:euxassay_001569 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source