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EMAGE:17169

Ddx6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 ( MGI:104976)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169
"Pseudo-wholemount" of euxassay_001557. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001557_01 euxassay_001557_02 euxassay_001557_03 euxassay_001557_04
EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169
euxassay_001557_05 euxassay_001557_06 euxassay_001557_07 euxassay_001557_08 euxassay_001557_09
EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169
euxassay_001557_10 euxassay_001557_11 euxassay_001557_12 euxassay_001557_13 euxassay_001557_14
EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169 EMAGE:17169
euxassay_001557_15 euxassay_001557_16 euxassay_001557_17 euxassay_001557_18 euxassay_001557_19
EMAGE:17169 EMAGE:17169
euxassay_001557_20 euxassay_001557_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17169Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17169_wholemount_strong.wlz
17169_wholemount_moderate.wlz
17169_wholemount_weak.wlz
17169_wholemount_possible.wlz
17169_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17169_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4769
Entity Detected:Ddx6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 ( MGI:104976)
Sequence:sense strand is shown

>T4769
CCACGCGTCCGGTTGATTCGGTGCATGAAAGCAAGTTAACTACTGCTGCTCACCGTTGAGAGACTTACAG
GTGCTTGCCTGAACTGCAATAAAGGACTCATATTATTGAGCAGGACTTATTTATCTCTTCATTTTGGAGA
GCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAGTTTGGAAGAGACACCTGTG
CAGCTAACAAAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGC
CAGCTGAGGGGCCCTGTGAAGGCCAGTGCTGGCCCTGGAGGAGGGGGCACACAGCCACAGCCACAGCTGA
ACCAGTTGAAGAACACCAGCACAATCAATAATGGCACTCCACAGCAAGCCCAGAGCATGGCCGCCACTAT
TAAACCTGGTGATGACTGGAAAAAGACATTAAAACTCCCTCCAAAGGATCTAAGAATCAAAACTTCGGAT
GTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTG
AAATGGGCTGGGAAAAACCATCTCCTATCCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATAT
CTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAAAGGCTGGAC
CTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAGA
TTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACCGGAGGAACCAATTTACG
AGATGACATAATGAGGCTTGATGATACAGTGCATGTGGTGATCGCTACCCCTGGCAGGATCCTGGATCTC
ATCAAGAAAGGCGTGGCAAAGGTTGACCATGTCCAGATGATAGTGCTAGATGAGGCAGATAAATTGTTGT
CACAGGATTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATA
TTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAAC
CTGATGGAGGAACTAACTCTGAAAGGAGTAACTCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGC
ACTGCCTCAATACACTTTTCTCCAGGCTTCAGATAAACCAGTCCATCATTTTCTGCAACTCCTCCCAGAG
AGTCGAGCTACTCGCCAAGAAGATTTCTCAGCTGGGCTACTCTTGCTTTTATATCCATGCTAAAATGAGG
CAGGAACATCGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATC
TGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGA
GACCTATCTTCATCGTATTGGAAGATCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACT
TATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCA
ACATCGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGACGAGAAACCGTAACAAGC
ACGCTTTGACAAACTACAGAAGGCTCTTTGGATCTGTGACACATCATTTTGGGGGGGTGCTCTTCTCTTT
GTGGGTTTTTTCATCTTTATTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATTTTTCTTTTTTTT
AAACTGGTGAAGAAAAACTGAAAAGAAGACATAGACCTTTTTTGTTCCACTTGTTTGCACTGTGTGCTGA
CTGAACATTCGTTGCACTAACTGCTGGTCTTTAAAGATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGA
AAAGAAAAGAAGGGGAGAAACCCTAAAAAAGAGAAGAATTTGGGTGAACACGTGCACCTGTCTAAAGTTC
TCCACTAGCTGACTCTACTGCATTTCAACTTCTCCCTGATTATTCATCCGTTTTTAAGCCTGAAGAGCTT
ATTACTTATTTGTGCGAAGTGCCTTATGCTACAAGACCATTAAGAATATCATCTTTACACACAGCCCAAG
GAATCAACAGAGTCATGTTCTATTTTCTTTTTTATTTCTTTGCCTCTTCATTTTGGTTTCACGTTGAAGT
CTCACCTCCTGTTCTACCAGTACTCAGCCCAGGGCCGGAAGGTGGACTAGTGATGGCAGCGCCATTTTCC
TTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTACATACATGTATTTAAAAAA
AAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5043599 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5043599 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17171 same embryo
 EMAGE:17170 same embryo
 EMAGE:17172 same embryo
 EMAGE:17173 same embryo
 EurExpress:euxassay_001557 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS