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EMAGE:17197

C8a complement component 8, alpha polypeptide ( MGI:2668347)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17197
euxassay_001591_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17197Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17197_wholemount_strong.wlz
17197_wholemount_moderate.wlz
17197_wholemount_weak.wlz
17197_wholemount_possible.wlz
17197_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17197_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
liver lobe
strong strong
regionalstrong expression: see section 01
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4794
Entity Detected:C8a, complement component 8, alpha polypeptide ( MGI:2668347)
Sequence:sense strand is shown

>T4794
CCACGCGTCCGGACACTAGTTGGTGACTTCTGGATGAGATGTTTGTGGTTGCTTTCTTTGGCTTGTCTTT
GGTGGCATGGCACCCTGGGGTAACTGCACAAGAGAAGGTGAACCAGCGGGTCACCCGAGCTGTGACCCCG
CAAGCAGTGTCCTGTCAGTTGAGTGACTGGTACAAATGGACAGATTGTTTTCCATGTCAGGATAAAAAGT
ACCGATACCGGAGCCTCTTGCAGCCAAGCAAGTTTGGAGGAACCATCTGCAGTGGTGATATCTGGGATGA
GGCCAGCTGTGACAGCCCCACACCTTGTCTAAGGCAAGCACAGTGTGGACAGGATTTCCAGTGTAGAGAG
ACAGGTCGCTGCCTGAAACGCCACCTGGTGTGTAACGGAGATAACGACTGCCTGGATGGCTCTGATGAGT
CCGACTGTGAAGATGTCAGGGTCACTGAGGATGATTGCCATCAGTATGAACCAATCCCAGGATCAGAAAG
GGCAGCCTTGGGGTACAACATCCTGACTCAAGAGGAAGCTCAGAGTGTTTACGATGCTAAGTATTATGGG
GGCCAGTGTGAAACTGTGTACAATGGAGACTGGAGAAAGCTGCGGTACGACCCCACCTGTGAGCGCCTCT
ACTATGGGGAGGATGAGAAATACTTTCGGAAGCCCTACAACTTCCTTAAGTACCACTTTGAAGCCCTGGC
GGATACTTCAATCTCCTCAGAGTTTTATGATGATGCGAATGATCTTTTTTTTCACATAAAGAATGGCAAG
TCCCACTCAGCTGGTGTAACCGTTGGCGTAGCCCCAGTAAAAAGTCCTGTCTCAATAGAGGTGACTGGAT
CCGGGTCCAAAGCATCTTCATTCCTGAACAAGTTAAACAAGTATAATGAGAAGAGATATGGCTTCATGAG
AGTGTCTACAAAGATACAGACTGCACAGTTTAAGATGAGAAGGAACAATATTGTGCTGGATGAAGGAATG
CTGCAGTCATTAATGGAGCTCCCAGAGCAGTTCAACTATGGCATGTACGCCAAGTTCATCAATGACTATG
GCACCCACTACATCACCTCTGGAACCATGGGTGGCATTTATGAATATGTTATGGTGCTTGACAAAGAGAA
AATGAAAACTGAAGGTACTACTGTGGATGAAGTCCAAAAATGCATTGGCGGTGGCATTGGCATAGGAATT
AAGGATAGTACAATTGAAGGAGTAGGTATATCAGGAGAGTTTTGTGAAAACTCTGGAGATGGTGACCGTG
ACATAAGGAAGAAAATCACAGGAGTGGAGGACATCATTTCTCGGGTGCAAGGTGGAAGTTCTGTCTGGGG
CAGTGTCTTGACACACAACAGCAGTGCCATTACATATCAGTCCTGGGGGAGATCGTTAAAGTATAACCCT
GTTGTTATCGATTTTGAGATGCAGCCTATCTACCAGCTACTGCGGCACACAAACTTGGGACCCCTGGAGA
CGAAACGTCAGAACCTGCGACGGGCTTTGGACCAGTACCTGATGGAATTTAATGCCTGTCGTTGTGGGCC
CTGCTTCAACAATGGGGAACCCATACTTGACGGCACCAACTGCCGGTGTCAGTGTAGTATGGGCCGGCAG
GGCCTGGCCTGTGAACGCACGGTGATAGAGGGGCTCAAAGACTTCAAAGCCGCTGGCCACTGGAGCTGCT
GGAGTTCCTGGTCAGAGTGCAGAGGAGGTTCCCAGGAGAGGAGGAGACAGTGCAACAACCCACCACCCAA
GAATGGAGGTACCCCATGCCTAGGGAGGAACCTGCAGACCCAGGCCTGCTGAGTACCTCTGGATGCAGAC
TGGGCAAGGAGGCTGCAGATGCTGTTACCTGTCTGGGTTGCTGGTTAGGACTGCTTGCTGCTCTGAGTAA
ATGCAAACCCACAAAGGCTATTCTCTTAATATACTCATGTTTTGTTTTGTTTTTTCTAGTCATAATTCTT
AGCCTCTATCAATAACCTGGCTCTAAAGCTGCCTCTTTGTTCCAGGGAGTTGTTGCCCTTTACTTCCCAG
AACCACCTTTCTATCCTGTTCTATTCAGGATGCTTAACAGTAAACGGGCTATGGTTTAGATACATCAGAA
TGTATTCCTCACAATTCTGGAAGCATATACTGAGAGATGAAGGTTCCAGAAGGTCTAGGGTCTGGAGAGG
CTGTGTTCCATTTTATATATGTCCTTTTGTTATGTTATCACATGGCAGAGGGGCCTCTAGGGCCTCTTTT
GTAAGGGCACTAGTCCTACTCATGAGAACTTTGCCTTTATGACTTTGTCATCTCTCAAAGTCCAGCCTCC
TCTTTCCACACTGGGTAGAGGGCTTCCATGTGGAGAACTTAGAAATCCCAGCATTCAGACCCCAGACCAT
CCCCTGTGATTCTCTTCTTGGTAAGCAATCAAATTTGAAGACAGAAAGTGGCCTGGTTTTATTCAGCACA
GTATCTTCAGATGCTGAGGCTACGCACTGCAGACTGTAGGGGAGTTCAACAGCAATGGTTGCTGGACAAG
CAGACAGACCAAGAGTCAGTTCATGGGTGAGGTCTGTATTGGCCAACCTCCCAGAACTGTAGGTGGACTT
GGAAGGGTCAATCAATAAAGATCAACGTCCATTCCCTGACCTTCCCGAAAAGAGCCAGTCACACCAGCCA
ACCTAGTGTACCAGTGCACTCTAAATAATGTACATGTTCAGCACAGTTGCCAAGCGACCTAATTAAGGTT
TCTGTTGCTATGAGAAAACATCACAAGCAAAAGCAACTGGGGAGAAAAGGAATAACTTCAGCTTGCATGC
CTCACTCACAGTCTATCATGAAGGGAAGTCAGGGCAGGAATTCAAGGCAGGAACCTGGAGGCAGGAACTG
AAGCAGCGATCATGGAGGGGCACTGCTGGCCAACTTCCTCCTCATGGTTTTCTCAGCCTGCTCTCTTGGA
TCACCCAATACCACCTGCCCAGGGATAGCAACACCCAGAGTGAGCTGAGTCCTCCAACATCAATCACTAA
TTTTTAAAAAAATCATAATACAGACTTGCTCAGAGGCCAGTCTAGTGTTTTTTGTTTTGTTTGTTTTTTT
TCCTTAATTGAAGTTCCCCCTTCCAAAATGTGTCACATTGACATACAACTAGATAAATCAACAGCCCAGG
TTTATCCCTGGCTTCTCTTCAAAGTTGATAGACTATGTAGATATGAAGCCTTCAGAAACAGATAACCAAC
TGTATACACAAAAAAGAGGAGGCTCTTGGGCCACTGGGAGTAAATTATTAACATCAACATATGTAGCATC
CAAGTGACTGCTGAGGGAGGACAAGTCAGAAAATGCAGTCTGCACACGTTATATATACATCAGAGGCAAC
AAGCACGGTGCCTATCTGAACCTGGATGGACTTTTTAACAGATCAACATGGAGGAGACTTTTGAAATAGA
AATCCAGCCTGATGCAAAACCTGACAGTGAGAAAGAACGTGGGGACTGGGAAAAATGACGAAAGACAAAG
AAAGACGGTGTATGAAACGTGTTCCAGTGCCTACCACATGGCAAATTATTAGCATCATCATTGTTATTCC
CATTGTTAAAACGTGATTCAGAGGTTTACCTAAATAAACTTGGCTCTTCTATCTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5052412 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5052412 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17198 same embryo
 EMAGE:17196 same embryo
 EurExpress:euxassay_001591 same experiment
 MGI:4823564 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS