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EMAGE:17347

Crk v-crk sarcoma virus CT10 oncogene homolog (avian) ( MGI:88508)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17347
euxassay_003789_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17347Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17347_wholemount_strong.wlz
17347_wholemount_moderate.wlz
17347_wholemount_weak.wlz
17347_wholemount_possible.wlz
17347_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17347_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7013
Entity Detected:Crk, v-crk sarcoma virus CT10 oncogene homolog (avian) ( MGI:88508)
Sequence:sense strand is shown

>T7013
CTGGGAGGCTGACACCGGAGCCGGTCCGCTGGGCGGCGGGCGCCAGGGCTGGAGGGGCGCGCGTGCCGGC
GGCGGCCCAGCGTGAAAGCGCGGAGGCGGCCATGGCGGGCAACTTCGACTCGGAGGAGCGGAGTAGCTGG
TACTGGGGCCGCCTGAGCCGGCAGGAGGCGGTGGCGCTATTGCAGGGCCAGCGGCACGGGGTGTTCCTGG
TGCGGGACTCGAGCACCAGCCCCGGGGACTATGTGCTTAGCGTCTCCGAAAACTCGCGCGTCTCCCACTA
CATCATCAACAGCAGCGGCCCGCGCCCTCCAGTGCCTCCGTCGCCCGCTCAGCCTCCGCCGGGAGTGAGT
CCCTCCAGGCTCCGAATAGGAGATCAAGAATTTGATTCATTGCCTGCTTTACTGGAATTCTACAAAATAC
ACTATTTGGACACTACAACATTGATAGAACCAGTGGCCAGATCAAGGCAGGGTAGTGGAGTGATTCTCAG
GCAGGGGGAGGCAGAGTATGTGCGGGCCCTCTTTGACTTTAATGGGAATGATGAAGAAGATCTTCCCTTT
AAGAAAGGAGACATGCTGAGAATCCGGGATAAGCCTGAAGAGCAGTGGTGGAATGCAGAGGACAGCGAAG
GAAAGAGGGGGATGATTCCTGTCCCTTACGTGGAGAAGTATAGACAGGCCTCCGCCTCAGTATCGGCTCT
GATTGGAGGTAACCAGGAGGGTTCCCACCCACAGCCACTGGGTGGGCCGGAGCCTGGGCCCTATGCCCAA
CCCAGCGTCAACACTCCGCTCCCTAACCTCCAGAATGGGCCCATTTATGCCAGGGTTATCCAGAAGCGAG
TCCCTAATGCCTACGACAAGACAGCCTTGGCTTTGGAGGTCGGTGAGCTGGTAAAGGTTACGAAGATTAA
TGTGAGTGGTCAGTGGGAAGGGGAGTGTAATGGCAAACGAGGTCACTTCCCATTCACACATGTCCGTCTG
CTGGATCAACAGAATCCCGATGAGGACTTCAGCTGAGTATAGCTCGACAGTTTGCTGACAGATGGAACAA
TCTGTTTCCCCCCAATTGCCATCTATACAATTTTCTTACAGGTGTCAAAGCAGTCTAGTTTATATAAGCA
TTCTGTTACCTGGGATCTTTTTTAAGACTGAACTACTCCATTCTCACTTGTATTTACCATATTCAGGGTA
CGAAACCGGAGGGCTTATGTGGTTAACTTCTGAGTTGGCAGTTTTAGGTGGTAGTTGCCGTGCCTGTATG
AGAAGACGTAAATACATTGCCTCCTTTCTTTTGGGCAAAACAGATCAACCTGTGGAAAGCTGATGGGCAG
GAAAAGAATGTTACTCACTGCTGACCCTGATTTCTTCAGAGGTTCTGTTTTCATCCTGAATCCATACTGT
CAAGTGGCAGCAGACTGTTCCCCACTCCCATGACGTAATCATGCACTGTGTGAATATTACCCAGTGGGGT
TGCATTTGCATTTATGGACCATGACCATTGTATGACTCATTCTGACATTTCAAATCCTGAGGATTCTGAG
AACACTACTAGAGGCATTTGTCTTCCTTGGATTTTTCTTGGATTCTTTCCTTGTTACTCTCCTCCCCTGT
ACCTATAAGTGGCTTGATTCTTAGGATAATGTATATCTTCATTCCAGATGAGAAGCAGGATGTACAGAGC
ACTTTATTCAGTGCATAGCTTTAAGCCAGTATTGGATTCACTCAGTGGATAAACTCCCAGCTCTCTGCCT
TCCCCCAAGGGGGCATCGTAGGTTCACACTGCTACCACAGCTCAAGACTCACCTTACTGATGGGACAGAT
CTGGCAGGGCCATTTTTCCTGATTGCTAGTATCCTAATGGGATGCTCAAAGTTCTCAGATTCTACTTGGA
GTGGAAGGACCAATCACTTACTGTATCCTATAGAAGGTATCAAGGGCCAAACTTTGCCCTCTGCATCATG
TGCAAGTTGTATAAAAGGCAGGTTAGAATTCTATGCATTTGGGTAGGATTGATACTTTGAAAACTATTCC
AGTCGTAAATTACTTATGTATCATTTTACATGGTTTAATAGTTGGTGAAGTATATTACACTATAAATTGC
CTTCATTTGGGTTCTCCTTTGTCCAGATTTAGTTTACAACCCTTTAAAGTAGAGAATGATTTATACGAGG
TCAGATGCTCCAGAGACTAGGCCTCTGAGGCCACAAATTATAGGGTTTCTTTAGACTGTAACATGAGACT
TTCAGGTGATAAAGGCACTTGCTGGTCTCTGGTGTAGGTGACCAATAGAAACACCTTATACTTTGCTTTG
AACCTCATTTTAGAAAAATAATTTACCTTCTTAGTTGTCTTGTGTAGATTAATATGATGAATTTGCATTC
ATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACATTGCTGAGCACGTGTGTAGAGATTTTGT
ACGAAAGAATGAGCAGAGTGCAGAAGCGTGTTGTATGGCCCAGGGACGCCAGTTGGCATACATTACCACA
GGCAGATTTAATGAGTTGATGCTAATTTAATACATTTTTTACCTCACTGTAGCTTGATAAAAACAGTAAT
ACTCAACTTTAGAGATGTTGGCCCAGTTCTGAGCTCATAATAGGTGGTCAGTGATACTGAATGGACAGGT
TTGTAGCACGTGACTTACTGCACCTGACTGCTTGTTTCACTTTTCAGTTAGCATAGATTGTGTAAATCCA
AATGCACAGTCAATCCTGTTTCCCTAAGCCTTGTGTGATGGTGAATGTCTTTAGTCCTAGCCCTTGGGAG
ACAAAGGCAAGTGGATCTCTGAGTTCAAGACCAACCTGGTCTACAGAGCTACTTCCAGAACAGTCAGGAG
TTAGAAAGTGAGACCTTGTTTCAAAAACAAAAACAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3992341 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3992341 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17345 same embryo
 EMAGE:17344 same embryo
 EMAGE:17346 same embryo
 EMAGE:17348 same embryo
 EurExpress:euxassay_003789 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS