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EMAGE:17450

Krt33a keratin 33A ( MGI:1919138)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17450
euxassay_003875_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17450Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17450_wholemount_strong.wlz
17450_wholemount_moderate.wlz
17450_wholemount_weak.wlz
17450_wholemount_possible.wlz
17450_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17450_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7276
Entity Detected:Krt33a, keratin 33A ( MGI:1919138)
Sequence:sense strand is shown

>T7276
AGAATACACACCTCATCTTCAGCCAGGCACCTCCCTCCCTCCAGCACCATGCCATACAACTGCTGCCTGC
CCGCCATGAGCTGCCGCACCAGCTGCTCTTCCAGGCCCTGCGTGCCCCCCAGCTGCCATGGCTGCACCCT
GCCCGGGGCCTGCAACATCCCCGCCAATGTGGGCAACTGCAATTGGTTCTGTGAGGGCTCCTTCAATGGC
AATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTATATGGAGAAGGTGAGGCAGCTGG
AGAGAGAGAATGCAGAGCTGGAATGTAGGATCCAGGAGAGGAACCAGCAGCAGGACCCCCTGGTGTGTCC
TGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGATCTTGTGTGGCAAATCTGAGAAC
GCCAGGCTGGTCGTGCAGATCGACAATGCCAAGCTGGCTTCTGATGACTTCAGGACCAAGTACGAGACAG
AGCTTAGTCTGCGGCAGCTGGTAGAGGCTGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACCCT
CTGCAAGTCTGACCTGGAGGCGCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAATCAC
GAGCAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCA
CCGTGGACCTGAACCGAGTACTCAACGAGACCAGGTGTCAGTACGAGGCCCTGGTGGAAACCAACCGCCG
GGAAGTGGAGGAATGGTACACCACACAGACAGAGGAGTTGAACAAGCAGGTGGTGTCCAGCTCAGAGCAG
CTGCAGTCCTGCCAGGCCGAGATCATCGAGCTGAGACGCACAGTCAATGCCCTGGAGATCGAGCTGCAGG
CCCAGCATGAACTGAGAAACTCTCTGGAGAACACCCTGACAGAGAGTGAGGCTCGCTACAGCTCCCAGCT
GTCCCAGGTGCAGTGCCTGATCACCAATGTGGAGTCCCAGCTTGGTGAGATCCGGGCTGACCTGGAGCGT
CAGAACCAGGAGTACCAAGTGCTGCTGGACATTCGGTCTCGTCTGGAGTGTGAGATCAACACGTACAGGG
GCCTGCTGGAGAGCGAGGACTGCAAGCTCCCTTGCAATCCCTGTGCCACAACCAATGCTTGTGATAAGCC
CATTGGGCCCTGTGTCCCTAACCCTTGTGTCACACGACCTCGATGTGGACCTTGCAACACTTTTGTGCGT
TAGAGACGCCATTGCCAGAAGGGGACAAGGATACCAGTTACATCGTAATGCCACCCCTTCCCAAGTCCTC
AAAGAGTCACCGCACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGAGTGTATTTTCTC
ATTTGATCCTTGGGCACAGGAGATGCAAAGTCTGTCTTGGGGAGCCTACAATACTCACACAAAGCCATAT
TTACATATGCAATGCTGTGCTTTAATAAAACTTCTCTAAATGTGACTGTAAATAACTCCGTTGAGTGTGG
AGGATCTGGTTGGCAAGCATGTGAAACAACATCAGTGAACTTAACTTTTCTTTGTTAAACTTTTTGTCTT
TTAAATGCAACACACATCCTTTGTCTTCCCAATAAATTCTTATTCTGGCACGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4166206 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4166206 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17449 same embryo
 EMAGE:17452 same embryo
 EMAGE:17451 same embryo
 EurExpress:euxassay_003875 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS