Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17495

4921511H03Rik RIKEN cDNA 4921511H03 gene ( MGI:1918170)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17495
euxassay_003937_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17495Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17495_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17495_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9757
Entity Detected:4921511H03Rik, RIKEN cDNA 4921511H03 gene ( MGI:1918170)
Sequence:sense strand is shown

>T9757
GGACAGGGCACTGGCAGTTGGAAGCATGGCAGAGGTCAAGCCAAGAGGACCTCAGACCTCAAAGACAGAA
ATAAAAATAAGAATTCACTACCATTGAGACTTGTAATCATCTAAAAAAGAAATAAGATTCATCATGTCTT
TCATGGTCCATAATCGGAAGGGCAGCAAAAAGCAATTTCAAGTGGATCCTCTTCTTCTGCCCAAGGTTCC
TCGTACCAATTACCTGCACCTTCAGGAAGAGAAGCACAGACTACAGCTAAAGAAATTCCTCCTTCACAGG
ATGTTTCTAGTGGGCTACATACAAGGCAACACGGAGAAAAAGGACATCTCTGAGTACTATGAGCAACTGT
TTCAGTCAATTCTGAAACATCATTTAGGCGAATCAGTGACAGGTCTCATGCTCATATACCCAAGTACTTT
TCTGCACATTCTTGAGAGTTCCAATGGCACACTCTTCCGGATTCTTCTAGATTATGTTGCCCATGAAAAG
AGTGAAACAGAATTTATGCTCCAAAACATGAAAATCGTCGTTGCTTCTCACAACATCCCCACGAGGCTGT
TCATGCAGTGGCATATCTCTGCAATCAAAGTCCCCGTTTTGTACCTAGATGACGAATCACAGTCTCCGTC
TATAGAGGAAGTCACCACAGAATTCCTCACCATGACTCACAAACTGGCACTCCAACTTTACAAGACAGTG
AAATTGGGCGCGAAAGGTCCAGGTGACAACTTACACCAACTTGCCCCTGAACTCATTCTTCCAGAACAAA
TTATCAAGTATTTATGCAAAGCTGAAGAATTCATGGACCCAGCGTCTTTCTTGAGCATGTATAACAGACC
CATACACGTTACCCTGGATTCCGATATTGTGTGGCCAGCTCCTTCCCGTTTCTAGAATGGGGAGAGTTGA
TTTGGAGAGGATGTCTACAACATTCAGAAGCATTGAAGATGGCACCAGAGCAGGAGGGTGAAAGAACGCA
TGTTCAGCCAGGCATAGAACAGGAGCCAGGAAGGGGACAAGACCATAAATTCCTGAATTTCTTTGTGTTT
TAGGCACTAAACATAATAAATTTCTTAAGACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6742354 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6742354 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17496 same embryo
 EMAGE:17497 same embryo
 EurExpress:euxassay_003937 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS