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EMAGE:17563

1700001F09Rik RIKEN cDNA 1700001F09 gene ( MGI:1919076)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563
euxassay_005892_01 euxassay_005892_02 euxassay_005892_03 euxassay_005892_04 euxassay_005892_05
EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563
euxassay_005892_06 euxassay_005892_07 euxassay_005892_08 euxassay_005892_09 euxassay_005892_10
EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563
euxassay_005892_11 euxassay_005892_12 euxassay_005892_13 euxassay_005892_14 euxassay_005892_15
EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563 EMAGE:17563
euxassay_005892_16 euxassay_005892_17 euxassay_005892_18 euxassay_005892_19 euxassay_005892_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17563Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17563_wholemount_strong.wlz
17563_wholemount_moderate.wlz
17563_wholemount_weak.wlz
17563_wholemount_possible.wlz
17563_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17563_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9795
Entity Detected:1700001F09Rik, RIKEN cDNA 1700001F09 gene ( MGI:1919076)
Sequence:sense strand is shown

>T9795
GCCTGTGAGGGATTCCATCAGATCCTAATGGGTTCCCAAGCAGGGTCATTTAGGAAGGCATCACCCCAAA
CTCCCAACATCGATGAGAACGAGAAAAGAATCAAGAGGTTGGAGAAGCTCAAAAGAGATCTCCAGAACAT
TAAAAATGAGAGAGGCATTCTCCAGGGAATCCTGGCCAAGTACAAGGATTTGAATGACAGGACCAACTTT
GAGACATTCATGCTTGAGATGCAACATAACCAGATGATGACTGACCTGAAGAGAATGTCCCAGGACATCA
GTGAGGCCTTGTACAAGTGCCAGCATTTGACTAAAGAAAATCAATTATACTGCTGCAGGAACTGCCACCT
CCTGATTGAATCTAACCTCATCCAGCACAAAGTCAGGATGTTGTGGAAGGAGAACAGACAGCTGCTAAGG
AAGCAGATTGCATTGGAAGAATGCAACATAAAAACAAAAATACTATGTAAAGAAGGCAGCCAGAAGATCA
AAGACGAATATAGCAGGCAAGCAGCAGGAAAACAAATAATTGTGGTACCTGGAAGTAAAGAAGAGGCTGC
TATGTCAAATCCATGTGCCTGAGAATCAAAAACGCTGGCTAAGGCTTTGTGTTCCTTCTCTGCACTTGGT
GAATAGTGATTGCCCACTGGAAGAGCAACAACAGGACCAAAAACAACAACTTAAATAATGGACTTTATGT
GAATCTAAGGGGAATGTCTCTCTTAAAAAGAAAAAAAAATGTCTTCTTCTAATGGAACTGAATATGTTTG
TTATGTATTAGTCAGTTTGTTTCACTAGCATTAGAAAGGTATGAGGAAGAATTTATTAACATTTCATCAT
CAATAAAAATTAAGGTTTTAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6770724 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6770724 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17565 same embryo
 EMAGE:17561 same embryo
 EMAGE:17564 same embryo
 EMAGE:17562 same embryo
 EMAGE:17566 same embryo
 EurExpress:euxassay_005892 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS