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EMAGE:17585

Hist1h4h histone cluster 1, H4h ( MGI:2448427)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585
euxassay_005924_01 euxassay_005924_02 euxassay_005924_03 euxassay_005924_04 euxassay_005924_05
EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585
euxassay_005924_06 euxassay_005924_07 euxassay_005924_08 euxassay_005924_09 euxassay_005924_10
EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585
euxassay_005924_11 euxassay_005924_12 euxassay_005924_13 euxassay_005924_14 euxassay_005924_15
EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585
euxassay_005924_16 euxassay_005924_17 euxassay_005924_18 euxassay_005924_19 euxassay_005924_20
EMAGE:17585 EMAGE:17585 EMAGE:17585 EMAGE:17585
euxassay_005924_21 euxassay_005924_22 euxassay_005924_23 euxassay_005924_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17585Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17585_wholemount_strong.wlz
17585_wholemount_moderate.wlz
17585_wholemount_weak.wlz
17585_wholemount_possible.wlz
17585_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17585_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
embryo
strong strong
ubiquitousstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T10047
Entity Detected:Hist1h4h, histone cluster 1, H4h ( MGI:2448427)
Sequence:sense strand is shown

>T10047
ATATAAGTAATGTGCCTGTGCCTTCCACTCTGTTGAGGTTTTTTCTTCAGCAAGTACACCATGTCTGGTC
GTGGCAAGGGCGGTAAAGGTCTTGGCAAAGGCGGCGCCAAGCGCCACCGCAAAGTGCTGCGTGACAACAT
CCAGGGCATCACGAAGCCCGCCATCCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTC
ATCTACGAGGAGACCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACA
CGGAGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCAC
CCTCTACGGATTCGGCGGTTAAGCGAATCTTGCTTCTGACCTACAAAACCAAAGGCCCTTTTCAGGGCCG
CCCACATTTTCTTATTAAAAGAGCGAACATGTAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6787571 using vector (pDONR 201) specific primers. Forward Primer - name:T7-pDONR 201-fw, sequence:CGTAATACGACTCACTATAGGGCTCGCGTTAACGCTAGCATGGAT; Reverse Primer - name:T3-pDONR 201-rv, sequence:CAAATTAACCCTCACTAAAGGGGTGCAATGTAACATCAGAGA. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6787571 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17587 same embryo
 EMAGE:17584 same embryo
 EMAGE:17586 same embryo
 EMAGE:17583 same embryo
 EMAGE:17588 same embryo
 EurExpress:euxassay_005924 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS