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EMAGE:17701

Arl13b ADP-ribosylation factor-like 13B ( MGI:1915396)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17701
euxassay_006031_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17701Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17701_wholemount_strong.wlz
17701_wholemount_moderate.wlz
17701_wholemount_weak.wlz
17701_wholemount_possible.wlz
17701_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17701_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9553
Entity Detected:Arl13b, ADP-ribosylation factor-like 13B ( MGI:1915396)
Sequence:sense strand is shown

>T9553
CCATTCTGATGTTGGAGCGGCCGCTATTGAAGTTTTTTTTTTTTTTTCTCTGGTGTCCCACTGACGCCGC
TCCTGTGTTCCTGAGCCAGTGTTCGGGCTGTCCCGGGGCGGCTGGCGGACTCGGTTAGGGGCCGGACCCC
GCGATCTGTCCGGGTCACCGCCCTCCCGGCCTGCCCTCTTTCCGGTCCACACTAGGGACGCCTGAGGCCG
TGGGGTCCCTGAGCTGGGCCGGGGAGCTCGGGGCTCATCCCCTCCTCCCGAGGCTCGGATGGGAGGTGGC
GGGAGGAGAGACCTGGGATGTTCAGTCTGATGGCCAACTGCTGCAACTTGTTCAAGCGGTGGCGGGAGCC
TGTCAGAAAGGTGACACTTGTGATGGTCGGCCTTGATAATGCTGGTAAAACAGCCACAGCAAAGGGAATC
CAAGGAGAGCATCCTGAAGACGTAGCTCCCACTGTTGGCTTTTCTAAAATTGATCTGAGACAAGGAAAGT
TCCAAGTTACCATCTTTGACTTAGGAGGTGGAAAAAGAATTCGGGGAATTTGGAAGAATTATTATGCTGA
ATCCTATGGGGTAATATTTGTTGTGGATTCCAGTGATGAGGAGAGAATGGAAGAAACAAAGGAGACAATG
TCCGAAGTGCTAAGACACCCGAGGATATCAGGAAAGCCTATATTGGTGCTGGCCAACAAGCAAGACAAGG
AGGGGGCTTTAGGCGAAGCGGATGTGATTGAGTGTCTCTCGCTGGAGAAGCTGGTCAACGAGCACAAGTG
CCTGTGTCAGATCGAACCTTGTTCAGCAGTCTTGGGATATGGAAAGAAAATTGACAAGTCCATTAAAAAG
GGGCTTTATTGGCTACTGCATATCATTGCAAAGGACTTTGATGCCTTAAGTGAACGCATCCAGAAAGACA
CAACTGAACAGCGAGCTCTTGAGGAACAAGAGAAACGTGAGAGGGCTGAACGAGTCCGGAAGTTAAGGGA
AGAAAGAGAACGAGAGCAGACGGAACTTGATGGGACCAGTGGTCTGGCTGAGATTGACTCAGGACCAGTT
CTTGCGAATCCTTTCCAACCCATTGCAGCTGTAATCATTGAGAATGAAAAGAAGCAGGAAAAAGAGAAAA
AGAAGCAGACCGTGGAGAAGGACAGTGATGTTGGTCTCCTAGAACATAAAGTGGAGCCAGAGCAAGCAGC
GCCTCAGAGTGAGGCAGATTGCTGCCTCCAAAACCCTGACGAGCGAGTGGTGGACAGTTACAGGGAGGCA
CTGTCGCAGCAGCTGGACAGTGAGGATGAGCAGGACCAGCGAGGGTCAGAGTCCGGGGAAAACAGTAAGA
AGAAAACCAAGAAACTAAGAATGAAAAGGAGTCAGCGGGTAGAACCAGTCAATACAGACGAGTCTACTCC
AAAGAGTCCCACGCCTCCCCAACCTCCCCCTCCTGTTGGCTGGGGAACCCCCAAAGTCACTAGACTTCCA
AAACTTGAGCCTCTTGGTGAAACACGTCACAATGATTTCTATGGGAAGCCGCTGCCTCCCCTGGCTGTGC
GACAGAGACCTAACGGTGATGCTCAGGACACGATCTCATAACCAAGTCGGATGGGTTGGTCCTTTTTATA
TCAGCAAGGTGAACTGAGACCTTTCCCCAAAGCAGAAAAGCCCTGAATGCTGATGATGGGCAAGACAACC
ATAATGATTTCAGGGAAGAAAGAATATCCAAGAACTTGACCTGATAATGTACTTCTCCATCTTCTGTGGT
TAAAGCAGAAAGGAAACAAAATGACCAGTAGCTGAAAAGAGCATCTGGCCACGTAAGCAGTCATGGCATC
GATGCTCTGGTTTACACATCCCGACTTTTGGACATACTCCTGAAGAAAAACCTCACAAGTTGAGCCAATG
GACTCTACATACCTGATTATTTAATAATCTGTATTTCTATGCATTAAACATGTTTTATAAGATATATGTA
CATGAAAGGGGAATTCCTGGGAAATTATAATCTAAATTTTAACTATTTTTATATTTTTTTCTAAACCTTT
TGTTTAAGTTTGCTATTGTATTGACTACGCTCTTTCTACAGATGCTCTGTTTAAACTGTCTGGATAGAAA
GTTGATTTACTGTACACACTTGAAGTGTACAAGCATGTATGCTTTGTGATAACATTGTTTCTAAAATGTA
CACTCCATCTTGATGTAATTTTAAAATAGTTACTATTTTAAAAAGCAAATTCTCAGATCTTTAATCTACC
AAATTACATGATTTGAGAGTGGTACCCAAGGAGAGAATTCAGTTCTGTTGTTGCTGTTCATTTTCCTTGG
TGATGATATCAATAAATGTTAAGATGTGTGAAATACCTTTAAGAAAATAACTAAAATTGTTAAATTAGAA
AAATGTATCCTGTGGGATAATGATTCAAAATCCTCACCCCCCCCCCCCCAAGGGACTAGACCTTCTCTGA
GTTCAGGGCCCTCTCTGTGCTCTCTGTCAGCAGCTTCATTGACTGCTTGGGTTGTTTTCTTTCGTCCATG
CCTTGAAATTAAAGGTAAAAGGCTCCTGAGGGTCTAGAGACTTCAGGTTTCCAGCCAGCATGGCTGTACA
AATAAAGATGTTGGTGCAAGTCCTTTCATAAAGCACTAGTTCTAACATGACTTCTTAATTTTAGATGACA
ATATTCTGCTCTTGAGTGCCATTGATAAGGTTCTCTGTCCAACGGCCCTTTACCAAAACTTGTAGAGATA
TTTTAGTAATGGATTTATAAGGTAATATTCAATTGGAGGCATGCCTTTAAGTCAAGGTGAAAATAACAAA
GATCAAGTCCCTTCTCACCCTGTTAAGATTGGTACCATATACTGGCAATGAACATACACTGGTTTCTGAA
TGTAAGTCCACCTAAGGTAGATTGATCTGATCATTTGCCTTTTAAATGTTTATAATGTATTGTGTTCATA
TTTGAGCTCCTTGGACCCGGATCAGTCAGGTCACATGATGCTAGTTGGCCCTGGTAGTGTTTCTGTGAGT
TTGTTCATTGTACTTGGCACAGTGATGGGGAAAAGGTTTAATTTCTATGCAAAACATATATGCAAAATTA
GCAGGTGGCTCACATAAGAGAACCACAAGACAGGATGTACATTCTGAACTGGATTTTAGAGGGAAAAGTG
CTCATCTTCTTGGTTCATTTTGTAATATTTAAATTGCCTTTTAAAACTAAACTTATACTTTTGCTATCTT
TTAATGCTCATCTGGTTTGAAGATATTCTTGCTTCCTACCAGTGTTTACTATAAAGTACAGTAATTACTG
ACTCTATTTCATGAAAACAGTTTTGAAATTGAATGTAACATAAACCGGAATCGATGTTTTCTATGGCACT
CTCAAAAAATTAATGTTTTCTTAAAGCTGTATATAAAAAATCCTTTAAAAACTGTTTTGTAAATCCTGTC
AGATTTTAATATTTCAGTCCTTATTTTGTTATACATTTTCATTCTATTCATCATGAATTATATAACATTT
CACACAATAAAAAATTATTTACAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30550373 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30550373 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17702 same embryo
 EMAGE:17705 same embryo
 EMAGE:17700 same embryo
 EMAGE:17704 same embryo
 EMAGE:17703 same embryo
 EurExpress:euxassay_006031 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS