EMAGE mouse gene expression spatial database

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EMAGE:17718

Col4a3bp collagen, type IV, alpha 3 (Goodpasture antigen) binding protein ( MGI:1915268)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006065. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006065_01	euxassay_006065_02	euxassay_006065_03	euxassay_006065_04

euxassay_006065_05	euxassay_006065_06	euxassay_006065_07	euxassay_006065_08	euxassay_006065_09

euxassay_006065_10	euxassay_006065_11	euxassay_006065_12	euxassay_006065_13	euxassay_006065_14

euxassay_006065_15	euxassay_006065_16	euxassay_006065_17	euxassay_006065_18	euxassay_006065_19

euxassay_006065_20	euxassay_006065_21	euxassay_006065_22	euxassay_006065_23	euxassay_006065_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17718_wholemount_strong.wlz

17718_wholemount_moderate.wlz

17718_wholemount_weak.wlz

17718_wholemount_possible.wlz

17718_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17718_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4227
Entity Detected:	Col4a3bp, collagen, type IV, alpha 3 (Goodpasture antigen) binding protein ( MGI:1915268)
Sequence:	sense strand is shown >T4227 AGCGGAGGTGTGAGTGAGTGGATCTGGGTCTCTGCCGTTGGCTTGGCTCTTCCCGTCTTCCTCCCCTCCT CCCTCCCTGACTGAGGTTGGCATCTAGGGGGCCGAGTTCAGGTGGCGGCGCCGGGCGCAGCGCAGGGGTC ACGGCCACGGCGGTTGACGGCTGGAAGGGCAGGCTTTCTTCGCCGCTCGTCCTCCTTCCCCGGTCCGCTC GGTGTCAGGCGCGGCGGCGGCGGCGCGGCGGGCGCGCTTCGTCCCTCTTCCTGTTCCCTCACTCCCCGGA GCGGGCTCTCTTGGCGGTGCCATCCCCCGACCCTTCACCCCAGGGACTAGGCGCCTGCACTGGCGCAGCT CGCGGAGCGGGGGCCGGTCTCCTGCTCGGCTGTCGCGTCTCCATGTCGGATAACCAGAGCTGGAACTCGT CGGGCTCGGAGGAGGATCCGGAGACGGAGTCCGGGCCGCCTGTGGAGCGCTGCGGGGTCCTCAGCAAGTG GACAAACTATATTCATGGATGGCAGGATCGTTGGGTAGTTTTGAAAAATAATACTTTGAGTTACTACAAA TCTGAAGATGAAACAGAATATGGCTGTAGGGGATCCATCTGTCTTAGCAAGGCTGTGATCACGCCTCACG ATTTTGATGAATGCCGGTTTGATATCAGTGTAAATGATAGTGTTTGGTACCTTCGAGCTCAGGACCCGGA GCACAGACAGCAATGGGTAGACGCCATTGAACAGCACAAGACTGAATCGGGATATGGATCTGAGTCCAGC TTGCGTAGACATGGCTCAATGGTGTCACTGGTGTCTGGAGCGAGTGGCTATTCTGCTACGTCCACCTCTT CTTTCAAGAAAGGCCACAGTTTACGTGAGAAACTGGCTGAAATGGAGACATTTCGGGACATCCTGTGCCG GCAGGTTGATACTCTCCAGAAGTACTTTGATGTCTGTGCTGACGCTGTCTCCAAGGATGAGCTTCAGAGG GATAAAGTCGTAGAAGATGATGAAGATGACTTCCCTACAACTCGTTCTGATGGAGACTTTTTGCACAATA CCAATGGTAATAAAGAAAAATTATTTCCACATGTAACACCAAAAGGAATTAATGGCATAGACTTTAAAGG GGAAGCAATAACTTTTAAAGCAACTACTGCTGGAATCCTTGCTACACTTTCTCATTGTATTGAATTAATG GTAAAACGGGAAGAGAGCTGGCAAAAAAGACACGATAGGGAAGTGGAAAAGAGGAGACGAGTGGAGGAAG CGTACAAGAATGTGATGGAAGAACTTAAGAAGAAACCCCGTTTCGGAGGGCCGGATTATGAAGAAGGTCC AAACAGTCTGATTAATGAGGAAGAGTTCTTTGATGCTGTTGAAGCTGCTCTTGACAGACAAGATAAAATA GAGGAACAGTCACAGAGTGAAAAGGTCAGGTTACACTGGCCCACATCATTGCCATCTGGAGACACCTTTT CTTCTGTCGGGACGCATAGATTTGTACAAAAGCCCTATAGTCGCTCTTCCTCCATGTCTTCCATTGATCT AGTCAGTGCCTCTGACGATGTTCACAGATTCAGCTCCCAGGTTGAAGAAATGGTACAGAACCACATGAAC TATTCATTACAGGATGTAGGTGGTGCACTGTATACTCCCAAAGTTCTGGTCTCGTTTTTATATTAAAAAA AAATACAAATGTTTTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4502118 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4502118 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17719 same embryo
	EMAGE:17721 same embryo
	EMAGE:17720 same embryo
	EurExpress:euxassay_006065 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source