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EMAGE:17719

Cdk7 cyclin-dependent kinase 7 ( MGI:102956)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719
"Pseudo-wholemount" of euxassay_006064. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006064_01 euxassay_006064_02 euxassay_006064_03 euxassay_006064_04
EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719
euxassay_006064_05 euxassay_006064_06 euxassay_006064_07 euxassay_006064_08 euxassay_006064_09
EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719
euxassay_006064_10 euxassay_006064_11 euxassay_006064_12 euxassay_006064_13 euxassay_006064_14
EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719
euxassay_006064_15 euxassay_006064_16 euxassay_006064_17 euxassay_006064_18 euxassay_006064_19
EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719 EMAGE:17719
euxassay_006064_20 euxassay_006064_21 euxassay_006064_22 euxassay_006064_23 euxassay_006064_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17719Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17719_wholemount_strong.wlz
17719_wholemount_moderate.wlz
17719_wholemount_weak.wlz
17719_wholemount_possible.wlz
17719_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17719_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9533
Entity Detected:Cdk7, cyclin-dependent kinase 7 ( MGI:102956)
Sequence:sense strand is shown

>T9533
AAGTAGCTGTTGGGCAGCTTTCGGACGCTTTAAATTCCTGCGGGGTGGAGGGCTTAGCTTGGGTGCCCGG
GTCTGGTTTCTCACTCGCATGGCTGTGGACGTGAAGTCTCGAGCGAAGCGCTATGAGAAACTGGACTTCC
TCGGAGAGGGACAGTTTGCGACGGTCTATAAGGCCAGGGACAAGAACACCAACCAAATCGTCGCCATTAA
GAAAATCAAACTTGGACACAGGTCAGAAGCTAAGGATGGAATAAATAGAACAGCCTTAAGGGAGATAAAG
CTCTTACAGGAACTAAGTCATCCAAATATAATTGGTCTCCTTGATGCATTTGGACATAAGTCTAACATTA
GCCTTGTCTTTGATTTTATGGAAACTGACCTCGAGGTTATTATAAAGGATAACAGCCTTGTGCTGACACC
ATCCCACATTAAAGCCTACATGTTGATGACTCTTCAGGGCTTAGAATATTTACATCAGCATTGGATTCTA
CACAGGGATCTGAAACCAAACAACTTGTTGTTAGATGAGAATGGAGTTCTGAAACTGGCAGATTTTGGCC
TGGCCAAATCATTTGGGAGCCCCAATAGGGCTTACACACATCAAGTTGTGACCAGATGGTACCGGGCTCC
TGAGTTATTGTTTGGAGCTAGGATGTATGGTGTGGGAGTAGACATGTGGGCTGTTGGTTGTATATTAGCA
GAATTGCTTCTAAGGGTTCCATTTTTGCCTGGAGATTCAGATCTTGATCAGCTAACAAGGATATTTGAAA
CTCTGGGTACACCAACTGAAGAGCAGTGGCCTGACATGTGTAGTCTTCCCGATTATGTGACATTTAAGAG
TTTCCCTGGGGTCCCACTGCAGCACATCTTCATCGCGGCTGGGGACGACCTGCTGGAGCTCATCCAAGGC
CTGTTCTTATTTAACCCGTGTACGCGGACCACAGCCTCACAGGCATTGAAGACCAAGTACTTCAGTAACC
GCCCCGGGCCAACACCTGGATGCCAGCTCCCGCGACCAAACTGTCCGGTGGAGGCATTAAAGGAACCGGC
GAATCCAACCGTGGCAACAAAGCGGAAAAGAGCAGAGGCCTTAGAACAAGGAATATTGCCCAAGAAGCTC
ATTTTTTAGTTGCAGCGAACAATGGACAGTTTCACTGCTGAAATAAATGATCCAAAGGCAAATAATGGAA
AAAATAGTGAATATTAAATGCTATAAGAGAGAACTTGTAAATATTCTACAGATGTAAAATATGTAAAACT
ACGGGTTATTTTTATTAAATGTATTTTACAATAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30358255 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30358255 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17718 same embryo
 EMAGE:17721 same embryo
 EMAGE:17720 same embryo
 EurExpress:euxassay_006064 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS