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EMAGE:17723

Rfc1 replication factor C (activator 1) 1 ( MGI:97891)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17723
euxassay_008895_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17723Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17723_wholemount_strong.wlz
17723_wholemount_moderate.wlz
17723_wholemount_weak.wlz
17723_wholemount_possible.wlz
17723_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17723_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9547
Entity Detected:Rfc1, replication factor C (activator 1) 1 ( MGI:97891)
Sequence:sense strand is shown

>T9547
GTTGTTGGCGCCAATGGATCCCGAGCCCCGATAACGAATTACCCCAGCCACGGGCCTGCCCACCTGCTCC
TGTTCGGTCGTGGGGCTGCGATGGACATTCGGAAATTCTTTGGGGTTATATCAAGTGGAAAAAAGCCTGT
AAACGAGACAGTAAAGAATGAGAAGACAAAAGCTTCGGAGGGAACTGTCAAAGGAAAAAAGGGAGTCAAG
GAGGCCAAGGTCAATAACTCCGGTAAAGAGGACGCCTCCAAACCAAAGCAGCACAGCAAGAAGAAGAGGA
TCATCAATGACTCAGACTCAGAGTCAGAGGAGACAGTACAGGTAAAAAATGCTAAAAAGAAATCAGAAAA
ATTGTCACTGTCTTATAAACCTGGTAAAGTCTCTCAGAAGGATCCTGTCACCTACGTCTCTGAGACAGAT
GAAGATGATGACTTTGTATGTAAAAAGGCAGCCTCCAAATCAAAAGAGAATGGAGTATCTACAAATAGTT
ACCTTGGAACATCAAACGTGAAAAAAAATGAAGAAAACGTTAAGACTAAGAACAAGCCGTTATCTCCAAT
AAAACTCACACCAACGTCAGTGCTCGACTATTTTGGAACTGAAAGTGTCCAGAGATCTGGGAAGAAGATG
GTGACAAGCAAAAGGAAAGAATCTTCTCAAAACACAGAGGATTCCAGATTAAATGATGAGGCCATCGCCA
AGCAGCTGCAGCTGGATGAAGATGCAGAGCTGGAGAGGCAGTTGCATGAAGATGAAGAATTTGCAAGAAC
ACTGGCCTTATTGGATGAAGAACCCAAGATCAAAAAGGCCCGAAAGGATTCTGAAGAGGGAGAAGAATCA
TTTTCATCTGTCCAAGATGATTTAAGCAAAGCAGAAAAGCAGAAAAGCCCTAATAAAGCCGAGCTTTTCT
CAACTGCAAGAAAGACCTACAGTCCTGCTAAGCATGGCAAGGGGAGGGCTTCAGAAGATGCTAAGCAGCC
TTGCAAATCAGCTCACCGGAAGGAAGCCTGTTCCTCACCCAAGGCCAGTGCCAAACTGGCGCTTATGAAA
GCAAAAGAAGAAAGTTCTTACAACGAAACAGAGCTGCTGGCTGCAAGAAGAAAAGAAAGCGCCACTGAAC
CCAAAGGAGAGAAAACAACTCCTAAGAAAACGAAAGTTTCTCCAACTAAGAGAGAGTCTGTAAGCCCAGA
AGACTCTGAAAAGAAGCGCACTAATTATCAAGCTTATCGAAGCTACTTGAACCGAGAAGGTCCCAAAGCT
CTGGGCTCCAAAGAAATACCCAAGGGAGCTGAAAATTGCTTGGAAGGCCTGACGTTTGTGATCACAGGAG
TGCTGGAGTCCATTGAACGAGACGAAGCCAAGTCTCTAATTGAACGTTATGGGGGGAAAGTAACAGGAAA
CGTGAGCAAGAAAACCAACTACCTCGTCATGGGCCGCGACAGTGGGCAGTCCAAGAGTGACAAGGCAGCA
GCTCTGGGAACAAAAATCCTCGATGAAGACGGCCTGTTGGATCTGATTCGAACTATGCCAGGCAAGAGAT
CCAAGTATGAGATGGCTGCTGAGGCTGAGATGAAGAAAGAAAAGTCCAAATTGGAGCGAACACCCCAAAA
AAATGATCAAGGAAAAAGAAAAATTAGTCCAGCCAAGAAGGAGTCAGAGTCTAAAAAGTGCAAGCTGACT
CTCCTAAAGAACAGTCCTATGAAGGCAGTGAAGAAGGAGGCAAGCACGTGCCCAAGGGGCCTGGATGTCA
AGGAGACACATGGCAACCGCAGTAGCAACAAAGAGGAATGTCTGCTCTGGGTGGATAAGTACAAGCCCGC
CTCACTCAAGAACATAATCGGACAGCAGGGTGACCAGAGCTGTGCCAACAAATTACTACGTTGGCTCAGA
AACTGGCACAAGAGTTCTCCTGAAGAGAAAAAACATGCAGCAAAGTTTGGCAAACTTGCCAGCAAAGATG
ATGGCTCCAGTTTCAAGGCAGCTCTGCTGTCTGGCCCTCCAGGTGTTGGCAAAACCACTACAGCTTCTCT
TGTGTGTCAGGAATTGGGCTACAGTTATGTGGAACTAAATGCAAGTGATACTCGGAGTAAGAACAGTTTG
AAAGCAGTTGTTGCTGAATCCTTGAACAACACCAGCATCAAAGGCTTTTATACAAGTGGAGCGGCTCCTT
CCGTGAGTGCGAGGCACGCCCTCATCATGGATGAGGTCGATGGCATGGCAGGCAATGAAGACAGGGGTGG
AATTCAGGAGCTAATAGGCCTGATAAAGCATACTAAAATTCCCATCATTTGTATGTGCAATGATAGAAAC
CACCCCAAAATTCGCTCATTGGTTCATTATTGTTTTGATCTTCGTTTCCAAAGACCTCGAGTTGAACAGA
TTAAGAGTGCAATGCTGTCTATTGCATTTAAAGAGGGTTTAAAAATCCCCCCTCCAGCTATGAATGAAAT
AATTTTGGGAGCTAATCAAGATGTCAGACAGGTTTTACACAATCTCAGTATGTGGTGTGCACAAAGTAAG
GCCCTGACCTATGACCAAGCCAAGGCTGATTCTCAGAGGGCTAAGAAGGATATCAGACTGGGCCCATTTG
ATGTCACTCGGAAAGTGTTTGCAGCTGGAGAGGAGACTGCACACATGTCACTGATGGACAAGTCAGATCT
CTTCTTCCATGACTATTCCATAGCACCCCTCTTTGTCCAGGAGAACTACCTGCATGTAAAGCCTGTGGCT
GCAGGAGGTGACATGAAAAAGCACTTGATGCTTTTAAGCCGGGCAGCAGATAGCATATGTGACGGTGACT
TAGTGGACAATCAGATCCGGAGTAAGCAAAACTGGAGTCTTCTGCCCACCCAGGCCATCTATGCCAGTGT
TCTTCCTGGAGAGTTGATGCGGGGCTACATGACTCAGTTTCCGAGCTTCCCGAGCTGGCTGGGGAAGCAC
TCGTCTACGGGCAAACATGATCGGATTGTTCAGGACCTATCCTTGCACATGAGTCTTAGAACTTACTCCA
GCAAAAGGACAGTGAACATGGATTACCTGTCACACATCAGAGACGCACTTGTACGACCCTTGACCTCACA
AGGGGTAGAAGGGGCTCAGCATGTCATCAAACTTATGGACACATACTATCTGATGAAAGAAGATTTTGAG
AACATCATGGAAGTTAGCAGCTGGGGGGGCAAGCCCAGTGCCTTTTCCAAGCTGGATCCCAAGGTGAAAG
CGGCCTTCACAAGAGCCTACAATAAGGAGGCCCACCTGACCCCATACTCACTTCAGGTAGTAAAGACATC
GAGGCTCAGCACGGGTCCAGCACTGGATTCTGAGTACAGTGAGGAGTTCCAGGAAGATGACACTCAGTCT
GAGAAAGAGCAGGATGCAGTGGAGACTGACGCCATGATCAAGCAGAAAAAGACAAGATCTTCAAAACCTT
CAAAGTCAGAAAGAGAGAAGGAGTCCAAAAAAGGAAAAGGAAAGAATTGGAAGAAATGAAATCACTGTTT
AGTACCAATAACTGCTGTTAACTTACCCTCTCGGCCAGTCCAGCTGGCCTAGAGCCTGAGAGCCTCACCC
TTTGCCAGAGTAACAAGTTTGGTGTAGCACAGCGGGGTGGCCTGGTGGTCCCATTATAAAGGACGGTACA
GCTAGAAGGTCTAACTAGCCAGCTCTCCTGCACCTCTTATAGAGGTGGGTAGGGCTGTTCCAGCCCTGCA
GTGTCCCTGCCTAACTGTTAGATTGCTGGGCTTCAAAGTGACTGTGTAGAATCAAAACTAGAAAGTACAC
AGGCATGGAGTCAGAGTTTAGTTAACCATAGCAAGACGGGACGCAGTGGGCATCTTTTGTAGCTTAAGTT
TATCCTAATGGCCTTTAGAGGAACAATGCTCAATTTTTTTTTTTTTAAACATGGTAGTTATTTTATGGTG
AAATTCTGTAAATAAATCTTAATCCAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
Notes:The probe template was PCR amplified from IMAGE:30549691 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30549691 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17727 same embryo
 EMAGE:17724 same embryo
 EMAGE:17726 same embryo
 EMAGE:17722 same embryo
 EMAGE:17725 same embryo
 EurExpress:euxassay_008895 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS