Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17764

Hoxb1 homeobox B1 ( MGI:96182)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764
"Pseudo-wholemount" of euxassay_008925. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008925_01 euxassay_008925_02 euxassay_008925_03 euxassay_008925_04
EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764
euxassay_008925_05 euxassay_008925_06 euxassay_008925_07 euxassay_008925_08 euxassay_008925_09
EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764
euxassay_008925_10 euxassay_008925_11 euxassay_008925_12 euxassay_008925_13 euxassay_008925_14
EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764
euxassay_008925_15 euxassay_008925_16 euxassay_008925_17 euxassay_008925_18 euxassay_008925_19
EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764 EMAGE:17764
euxassay_008925_20 euxassay_008925_21 euxassay_008925_22 euxassay_008925_23 euxassay_008925_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17764Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17764_wholemount_strong.wlz
17764_wholemount_moderate.wlz
17764_wholemount_weak.wlz
17764_wholemount_possible.wlz
17764_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17764_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35460
Entity Detected:Hoxb1, homeobox B1 ( MGI:96182)
Sequence:sense strand is shown

>T35460
CTTCGGCCTCTACATGGACTATAATAGGATGAGTTCCTTTTTAGAGTACCCACTTTGTAACCGGGGACCC
AGCGCCTACAGCGCCCCAACCTCTTTTCCCCCCTGCTCAGCTCCGGCCGTTGACAGCTACGCAGGGGAGA
GCCGCTATGGTGGAGGGCTGCCTAGCTCAGCGCTCCAACAAAACTCGGGGTATCCTGTCCAGCAGCCGCC
GTCATCCCTGGGGGTGTCCTTTCCCAGCCCCGCTCCCTCGGGGTACGCCCCAGCCGCCTGCAACCCCAGC
TATGGGCCTTCTCAGTATTATTCTGTGGGTCAGTCGGAAGGAGATGGAAGCTATTTTCATCCGTCGAGCT
ACGGAGCCCAGCTAGGGGGGTTGCCCGACAGCTATGGAGCGGGTGGAGTCGGCTCAGGGCCATATCCTCC
GCCGCAGCCCCCATACGGAACTGAGCAGACCGCAACCTTTGCATCAGCCTACGACCTCCTCTCTGAGGAC
AAGGAATCGCCTTGCTCGTCAGAACCCAGCACTCTCACTCC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 96784. Forward Primer - name:096784_F_cDNA_Hoxb1, sequence:CTTCGGCCTCTACATGGACTAT; Reverse Primer - name:096784_N_SP6_cDNA_Hoxb1, sequence:GGAGTGAGAGTGCTGGGTTCT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17766 same embryo
 EMAGE:17765 same embryo
 EMAGE:17763 same embryo
 EurExpress:euxassay_008925 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS