EMAGE mouse gene expression spatial database

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EMAGE:17801

Pax1 paired box gene 1 ( MGI:97485)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008970. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008970_01	euxassay_008970_02	euxassay_008970_03	euxassay_008970_04

euxassay_008970_05	euxassay_008970_06	euxassay_008970_07	euxassay_008970_08	euxassay_008970_09

euxassay_008970_10	euxassay_008970_11	euxassay_008970_12	euxassay_008970_13	euxassay_008970_14

euxassay_008970_15	euxassay_008970_16	euxassay_008970_17	euxassay_008970_18	euxassay_008970_19

euxassay_008970_20	euxassay_008970_21	euxassay_008970_22	euxassay_008970_23	euxassay_008970_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17801_wholemount_strong.wlz

17801_wholemount_moderate.wlz

17801_wholemount_weak.wlz

17801_wholemount_possible.wlz

17801_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17801_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

head mesenchyme

strong

regional

strong expression: see section 02 03 04 05 06 20 moderate expression: see section 01 07 08 09 12 21 22 23 24

thymus primordium

strong

regional

strong expression: see section 10 11 12 13 14 15

pharyngo-tympanic tube

strong

regional

strong expression: see section 04 05 06 07 08 16 17 18 19 20 21 22 23

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 09 10 11 12 13 14 17 18 19 20 21

pharynx epithelium

moderate

regional

moderate expression: see section 10 11 13 14 15 16

axial skeleton

strong

regional

strong expression: see section 09 10 11 12 13 14 15 16 17 18 19 moderate expression: see section 07 08

sternum

strong

regional

strong expression: see section 13 14 15 moderate expression: see section 12

axial skeleton tail region

strong

regional

strong expression: see section 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T35510
Entity Detected:	Pax1, paired box gene 1 ( MGI:97485)
Sequence:	sense strand is shown >T35510 CACATTCAGTCAGCAACATCCTGGGCATCCGGACGTTTATGGAGCAAACAGGGGCCCTAACAGGGAGCGA AGGCGCTGCCTACTCCCCCAAGATGGAAGACTGGGCGGGTGTGAACCGTGCGGCCTTCCCCACCTCGCCA GCAGTGAATGGACTCGAGAAACCTGCCTTGGAGGCAGACATTAAATATACTCAGCTGGCTTCCAGCCTCT CCGCAGTGGGAGGCTTCCTTCCTGCCTGCGCCTACCCGGCTTCCAACCAGCAGGGAGTATACAGCGCTCC AGCAGCCGGCTACCTATCTCCCGGCCCGCCCTGGCCACCAGCCCAGGCACCCCCACTGACGCCCCACGGA GCTGGTGTGGCGGTGCACGGCGGGGAGCTTGCAGCGGCAATGACCTTCAAACACCGAGAAGGGACCGACC GGAAGCCCCCCAGCCCGGGAGGCAAGGCCACGGATGCACTCGGTAGCTTACACGGACTGCCCATCCCAGC CTCGACCTCCTAGGGGCTGTCCTCTCACAGAGCCACAGCCCGGTTCAGAGGAGCCGGCCGGGAGTGCAGC TCAGCTCATTCGACCTCTGCACCTCTGCGCTAGCAGCATCCTGGAGTTGGGGCCCCGGCATTGCTTTGGT CTCAACAGTTCCGCCGGTGCTTCCTTCAGGAAACCCTGGAATTTTTTAGGTCTTTCCGAGTCTTGGTTTT AGATGGCTACATTCTCCTAACCTTC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 98279. Forward Primer - name:098279_F_cDNA_Pax1, sequence:CACATTCAGTCAGCAACATCCT; Reverse Primer - name:098279_N_SP6_cDNA_Pax1, sequence:GAAGGTTAGGAGAATGTAGCCA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17802 same embryo
	EurExpress:euxassay_008970 same experiment
	MGI:4827061 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source