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EMAGE:17855

Fam59b family with sequence similarity 59, member B ( MGI:2685290)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17855 EMAGE:17855 EMAGE:17855 EMAGE:17855 EMAGE:17855
"Pseudo-wholemount" of euxassay_009052. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_009052_01 euxassay_009052_02 euxassay_009052_03 euxassay_009052_04
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euxassay_009052_10 euxassay_009052_11 euxassay_009052_12 euxassay_009052_13 euxassay_009052_14
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euxassay_009052_15 euxassay_009052_16 euxassay_009052_17 euxassay_009052_18 euxassay_009052_19
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View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17855Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17855_wholemount_strong.wlz
17855_wholemount_moderate.wlz
17855_wholemount_weak.wlz
17855_wholemount_possible.wlz
17855_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17855_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36436
Entity Detected:Fam59b, family with sequence similarity 59, member B ( MGI:2685290)
Sequence:sense strand is shown

>T36436
CAAGGTTACTCAGCTGCTCCTTCCTCCTCCTTGTCATCCTCTGAGTGGCAGGAGCCAGCTCTGGAGCCCC
TGGACCCATTTGAGCTGGGGCAGGCCAGTCCTCCTGAGCTGGAGCTAGTGCGCTGTCAGGAGCCCAGAGC
TGCGGGGGCACCTGGGTCAGGACCTTGCCTTTCACCACTTGGTCAGCCCAAGGCCTTTGAGCCCGAAGGT
TTGGTGCTGAGGCAGGTCCCTGCCTCACTGTCACCAGCTGCCTTGCAGGGGCCTGAGGCAGGAGGAACCC
TACTCTTTCTCACCCAAGGATGCCTGGAAGGGCCTCCTGGCAGCCCCCGGGAGGGAGCCACAGGTGCTGG
GGTCCGGGATGCCTCCTCCTGGCAGCCACCAGCAGACTTGTCTGCACTCTCCCTGGAAGAGGTCTCCCGT
AGTCTGCGCTTCATTGGGCTCTCAGAGGACGTGGTGAGCTTCTTTGCCCGAGAACGCATCGACGGAAGCA
TCTTTGTGCAGCTCAGTGAAGACATCTTGGCTGACGACTTCCATCTCACCAAGCTTCAGGTCAAGAAAAT
CATGCAATTCATCAAAGGTTGGAGACCCAAGATCTGAACCAGCCAGCCAGGTGCTGCACAGCCTCAACTT
TGGGAGCAGAGGCCCTGTGGGGTTAACTTGGGTCTGCCAGAAACAGTGCTT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 78633. Forward Primer - name:078633_F_cDNA_Gm444, sequence:CAAGGTTACTCAGCTGCTCCTT; Reverse Primer - name:078633_N_SP6_cDNA_Gm444, sequence:AAGCACTGTTTCTGGCAGACC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17854 same embryo
 EMAGE:17851 same embryo
 EMAGE:17853 same embryo
 EMAGE:17852 same embryo
 EurExpress:euxassay_009052 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS