EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17890

Igh-VS107 immunoglobulin heavy chain (S107 family) ( MGI:96490)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009589. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009589_01	euxassay_009589_02	euxassay_009589_03	euxassay_009589_04

euxassay_009589_05	euxassay_009589_06	euxassay_009589_07	euxassay_009589_08	euxassay_009589_09

euxassay_009589_10	euxassay_009589_11	euxassay_009589_12	euxassay_009589_13	euxassay_009589_14

euxassay_009589_15	euxassay_009589_16	euxassay_009589_17	euxassay_009589_18	euxassay_009589_19

euxassay_009589_20	euxassay_009589_21	euxassay_009589_22	euxassay_009589_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17890_wholemount_strong.wlz

17890_wholemount_moderate.wlz

17890_wholemount_weak.wlz

17890_wholemount_possible.wlz

17890_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17890_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

mesenchyme

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

upper lip

strong

regional

strong expression: see section 08 09 10 11 12 13 14

axial skeleton

strong

regional

strong expression: see section 12 13 14 moderate expression: see section 10 11

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T36490
Entity Detected:	Igh-VS107, immunoglobulin heavy chain (S107 family) ( MGI:96490)
Sequence:	sense strand is shown >T36490 TGGTATCCAGTGTGAGGTGAAGCTGGTGGAATCTGGAGGAGGCTTGGTACAGTCTGGGCGTTCTCTGAGA CTCTCCTGTGCAACTTCTGGGTTCACCTTCAGTGATTTCTACATGGAGTGGGTCCGCCAAGCTCCAGGGA AGGGACTGGAGTGGATTGCTGCAAGTAGAAACAAAGCTAATGATTATACAACAGAGTACAGTGCATCTGT GAAGGGTCGGTTCATCGTCTCCAGAGACACTTCCCAAAGCATCCTCTACCTTCAGATGAATGCCCTGAGA GCTGAGGACACTGCCATTTATTACTGTGC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 83971. Forward Primer - name:083971_F_cDNA_Igh-VS107, sequence:TGGTATCCAGTGTGAGGTGAAG; Reverse Primer - name:083971_N_SP6_cDNA_Igh-VS107, sequence:GCACAGTAATAAATGGCAGTGTC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17889 same embryo
	EMAGE:17888 same embryo
	EurExpress:euxassay_009589 same experiment
	MGI:4825541 same experiment
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source