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EMAGE:18045

Tnfsf9 tumor necrosis factor (ligand) superfamily, member 9 ( MGI:1101058)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045
euxassay_011811_01 euxassay_011811_02 euxassay_011811_03 euxassay_011811_04 euxassay_011811_05
EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045
euxassay_011811_06 euxassay_011811_07 euxassay_011811_08 euxassay_011811_09 euxassay_011811_10
EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045
euxassay_011811_11 euxassay_011811_12 euxassay_011811_13 euxassay_011811_14 euxassay_011811_15
EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045 EMAGE:18045
euxassay_011811_16 euxassay_011811_17 euxassay_011811_18 euxassay_011811_19 euxassay_011811_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:18045Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
18045_wholemount_strong.wlz
18045_wholemount_moderate.wlz
18045_wholemount_weak.wlz
18045_wholemount_possible.wlz
18045_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:18045_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
humerus
moderate moderate
regionalmoderate expression: see section 01 02 17 18 19 20
hip
weak weak
regionalweak expression: see section 06 12
femur
moderate moderate
regionalmoderate expression: see section 01 02 03 weak expression: see section 14 15 16 17 18
meckel's cartilage
weak weak
regionalweak expression: see section 02 03 04 05 06 07 08 10 11 12 13 14 15
basisphenoid bone
weak weak
regionalweak expression: see section 06 07 08 09
orbito-sphenoid
weak weak
regionalweak expression: see section 02 03 04 14 15 16 17 18 19
scapula
moderate moderate
regionalmoderate expression: see section 01 17
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T37164
Entity Detected:Tnfsf9, tumor necrosis factor (ligand) superfamily, member 9 ( MGI:1101058)
Sequence:sense strand is shown

>T37164
AGACATCCAGCAGGTACTTCGTGCCCCTCGGATGCGGCGCTCCTCAGAGATACCGGGCTCCTCGCGGACG
CTGCGCTCCTCTCAGATACTGTGCGCCCCACAAATGCCGCGCTCCCCACGGATGCTGCCTACCCTGCGGT
TAATGTTCGGGATCGCGAGGCCGCGTGGCCGCCTGCACTGAACTTCTGTTCCCGCCACCCAAAGCTCTAT
GGCCTAGTCGCTTTGGTTTTGCTGCTTCTGATCGCCGCCTGTGTTCCTATCTTCACCCGCACCGAGCCTC
GGCCAGCGCTCACAATCACCACCTCGCCCAACCTGGGTACCCGAGAGAATAATGCAGACCAGGTCACCCC
TGTTTCCCACATTGGCTGCCCCAACACTACACAACAGGGCTCTCCTGTGTTCGCCAAGCTACTGGCTAAA
AACCAAGCATCGTTGTGCAATACAACTCTGAACTGGCACAGCCAAGATGGAGCTGGGAGCTCATACCTAT
CTCAAGGTCTGAGGTACGAAGAAGACAAAAAGGAGTTGGTGGTAGACAGTCCCGGGCTCTACTACGTATT
TTTGGAACTGAAGCTCAGTCCAACATTCACAAACACAGGCCACAAGGTGCAGGGCTGGGTCTCTCTTGTT
TTGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 98729. Forward Primer - name:098729_F_cDNA_Tnfsf9, sequence:AGACATCCAGCAGGTACTTCGT; Reverse Primer - name:098729_N_SP6_cDNA_Tnfsf9, sequence:GCAAAACAAGAGAGACCCAGC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:18046 same embryo
 EMAGE:18044 same embryo
 EMAGE:18047 same embryo
 EMAGE:18043 same embryo
 EurExpress:euxassay_011811 same experiment
 MGI:4828849 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS